Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq8 448 7e-121 seq10 311 1e-79 seq12 145 1e-29 seq2 89.7 8e-13 >seq8 Length=25958679 Score = 448 bits (496), Expect = 7e-121 Identities = 612/851 (72%), Gaps = 4/851 (0%) Strand=Plus/Plus Query 215438 GAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCT 215497 |||| ||| |||||| |||| | || || ||||| || ||||||||||| || | ||| Sbjct 20127937 GAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCT 20127996 Query 215498 AGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAA 215557 | ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| || Sbjct 20127997 ACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAG 20128056 Query 215558 TGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCT 215617 ||| | |||||||| || |||| | || || | | |||||| | ||||| | || Sbjct 20128057 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 20128116 Query 215618 G--CATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCT 215675 |||| || || | |||||||||| || | | | |||||| | |||||||| Sbjct 20128117 TGTCATA-TG-GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTG 20128174 Query 215676 GTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCG 215735 |||||| || || || ||||| | ||||| ||| || ||| | || || | | Sbjct 20128175 CTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTG 20128234 Query 215736 GTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGT 215795 |||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 20128235 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGA 20128294 Query 215796 TTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTG 215855 |||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||| Sbjct 20128295 TTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTG 20128354 Query 215856 GTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAA 215915 |||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | | Sbjct 20128355 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 20128414 Query 215916 TCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGG 215975 |||| || || ||||| | |||||| || | ||||||| || || |||||||| | Sbjct 20128415 TCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAG 20128474 Query 215976 AAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCAT 216035 | || || || || || || || || ||||| ||||| || | ||||||||||| || Sbjct 20128475 AGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTA 20128534 Query 216036 CTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCT 216095 ||| |||||||| | | ||||||||| | | ||| | ||||| | | || | Sbjct 20128535 GTTTTAACAACTCTCGTTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTT 20128594 Query 216096 GGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACC 216155 || ||||| | ||| | |||||||| ||||| || ||||| ||||| ||||||| Sbjct 20128595 GGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACC 20128654 Query 216156 AGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAG 216215 | ||||| || || ||| |||||| ||||||||| || | | ||| | | Sbjct 20128655 AATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTG 20128714 Query 216216 CAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGG 216275 | ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | | Sbjct 20128715 CTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 20128774 Query 216276 CTGCTGCTGAA 216286 ||||| |||| Sbjct 20128775 CTGCTCTTGAA 20128785 >seq10 Length=20731201 Score = 311 bits (344), Expect = 1e-79 Identities = 435/610 (71%), Gaps = 10/610 (2%) Strand=Plus/Plus Query 215677 TGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGG 215736 |||||| || || || ||||| | ||||| ||| || ||| | | || || | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 215737 TCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTT 215796 ||| || ||||| ||||| |||||| | ||||| ||||| || ||||||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 215797 TGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGG 215856 ||| |||||||| || || ||||| || ||||| | ||| |||||||||||||| ||||| Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 215857 TGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAAT 215916 ||| ||||| ||||| | || ||| ||||| ||||| | || || ||| | | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 215917 CAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGA 215976 | | || || ||||| | |||||| || | ||||||| || || |||||||| || Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 215977 AACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATC 216036 || || || || || || || || ||||| ||||| || | ||||||||||| || Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 ||| |||||||| || | | ||||||||| | || || | ||||| | | || || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 | | ||| | ||| | |||||||| ||||| || ||||| ||||| |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216 | ||| || || | | | ||| ||||||||| || | | ||| | || Sbjct 18976131 ATATGTAGTTGA------TAGCCA----ATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276 ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | || Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Query 216277 TGCTGCTGAA 216286 |||| |||| Sbjct 18976241 TGCTCTTGAA 18976250 Score = 168 bits (186), Expect = 1e-36 Identities = 171/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 9553647 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 9553588 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| ||| Sbjct 9553587 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 9553528 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | Sbjct 9553527 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 9553468 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACA 215957 ||||| || || ||||| | |||||| || | ||||||| Sbjct 9553467 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACA 9553425 >seq12 Length=23561512 Score = 145 bits (160), Expect = 1e-29 Identities = 191/265 (72%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 9700336 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 9700395 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| | ||||| || || || Sbjct 9700396 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGCAGATATTGATGGTATT 9700455 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | |||| ||| |||||| |||| | || || ||||| || ||||||||| | || | Sbjct 9700456 CGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTACCATTATT 9700515 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| | || |||||||| ||||| ||| | || |||||||| ||| | ||||| Sbjct 9700516 CCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGAAGCTGCATCTGTTGAT 9700575 Query 215555 GAATGGCTCTACAATGGTGGACCTT 215579 || ||| | |||||||| || |||| Sbjct 9700576 GAGTGGTTATACAATGGCGGTCCTT 9700600 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| ||||| || ||||| ||||| |||||| | ||||| || || ||| Sbjct 9700776 ACTATGGCTTTCAATCTAAACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGT 9700835 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 |||||| ||||||||| || | | || | || |||||||||| |||||| Sbjct 9700836 CGCGTTATTAATACTTGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATA 9700895 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 ||||| ||||| ||||||||||||| ||||| | |||||| |||| Sbjct 9700896 CACGAACGTAATACTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAA 9700943 >seq2 Length=33962743 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| ||||| || || || ||||| |||||||| ||||| || || ||| Sbjct 14982325 ACTATGGCTTTCAATCTAAATGGGTTCAATTTCAACCA-TCTGTAGTTGATAGCCAAGGT 14982267 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 |||||| ||||||||| || | | ||| | ||| |||| ||||||||||||| Sbjct 14982266 CGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAATCTTGCTATGGAAGTAATG 14982207 Query 216239 CACGAGCGTAACGCTCACAAC 216259 ||||| ||||| |||||| || Sbjct 14982206 CACGAACGTAATGCTCACCAC 14982186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745046040980640