Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq8 446 2e-120 seq10 311 1e-79 seq12 131 2e-25 seq6 87.8 2e-12 >seq8 Length=25958679 Score = 446 bits (494), Expect = 2e-120 Identities = 587/811 (72%), Gaps = 2/811 (0%) Strand=Plus/Plus Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917 || || ||||| || ||||||||||| || |||| |||| || ||||| | ||| Sbjct 20127961 TACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCAC 20128020 Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 || || || ||||||||||| ||| || | ||||||||||| || || || ||||||||| Sbjct 20128021 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTAT 20128080 Query 169978 CAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 170037 | || || | | |||||| | | || | || | |||||| | |||||||| Sbjct 20128081 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCATATGGGTCGTGAGTGGGAA 20128140 Query 170038 CTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCA 170097 || | |||| | ||||||||||||||||| ||| |||||||| ||||| || | Sbjct 20128141 CTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCG 20128200 Query 170098 GCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATG 170157 || || ||||| ||||| || ||| | ||||| ||| |||||| || || ||| Sbjct 20128201 GCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATG 20128260 Query 170158 CCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATT 170217 ||| |||| || || ||||| || ||||| ||| | |||||||| |||||||| ||||| Sbjct 20128261 CCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATC 20128320 Query 170218 CTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCA 170277 |||||||| ||||| || ||| ||| || |||||| | ||||| || | || ||| Sbjct 20128321 CTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGT 20128380 Query 170278 GCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCA 170337 || ||||| ||||| | ||||| ||| | | ||||| || || || || ||||| || Sbjct 20128381 GCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCT 20128440 Query 170338 CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 || | || |||| ||| || ||||| ||||| || || || ||||| || || ||| Sbjct 20128441 GCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCAT 20128500 Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCAC 170457 || || ||||| || | ||||||||||||||||| |||||||| |||| | ||| Sbjct 20128501 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCGTTACAC 20128560 Query 170458 TTCTTCCTTGCTA-CATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCAC 170516 ||||| |||| || | | ||||||||| | || ||||| ||| | | |||||| | || Sbjct 20128561 TTCTT-CTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 20128619 Query 170517 AATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAA 170576 ||||| || || || || ||||| || |||||||| || | || ||| | ||| Sbjct 20128620 TATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCG 20128679 Query 170577 AGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCA 170636 || || ||| ||||| || | | ||| | || || || ||||||||||||||||| Sbjct 20128680 CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCA 20128739 Query 170637 TGAGCGTAATGCACACAACTTCCCACTTGAC 170667 || |||||||| ||||||||||| || ||| Sbjct 20128740 CGAACGTAATGCTCACAACTTCCCTCTAGAC 20128770 >seq10 Length=20731201 Score = 311 bits (344), Expect = 1e-79 Identities = 428/595 (72%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 170073 TGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGG 170132 ||| |||||||| ||||| || |||| || ||||| ||||| | || ||| | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 170133 TCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTT 170192 ||| ||| ||||| || || |||||| |||| || || ||||| || ||||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 170193 CGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGG 170252 |||||||| ||||| || ||||| |||||||| | ||| || ||| ||| || ||||| Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 170253 TATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAAT 170312 | | ||||| || | || || || ||||| ||||| | ||||| ||| | | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 170313 CAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGA 170372 | | || || || || ||||| || || | || |||| ||| || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 170373 AACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAG 170432 || || || ||||| || || ||||| || ||||| || | ||||||||||||||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 170433 CTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTG 170492 |||||||| ||| | | ||||||||| | ||| | | ||||||||| | || || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 170493 GTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCA 170552 ||| | | | | |||||| | || ||||| || || || || ||||| || |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 170553 GTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGC 170612 | || |||| | ||| | | || ||| ||||| || | | ||| | || Sbjct 18976131 AT--AT-GTAG-TTGAT------AGCCAATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 170613 AAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 || || ||||||||||||||||| || |||||||| ||||||||||| || ||| Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 18976235 >seq12 Length=23561512 Score = 131 bits (144), Expect = 2e-25 Identities = 209/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 9700324 TGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 9700383 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || |||||||| || || || | || Sbjct 9700384 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGCAGAT 9700443 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || | ||| | |||| || | || || ||||| || |||||| Sbjct 9700444 ATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCT 9700503 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||| | || |||| |||| | || ||||| | ||||| || | ||||||||||| Sbjct 9700504 GGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGAAGCT 9700563 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||||||||| || || || ||||||||| | || || | | |||||| Sbjct 9700564 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 9700623 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 170476 CCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAAT 170535 ||||||||| | || ||||| ||| | | |||||| | || ||||| || || || || Sbjct 9700737 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 9700796 Query 170536 GGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCA 170595 ||||| || |||||| | || | || ||| | ||| || || ||| ||||| Sbjct 9700797 GGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 9700856 Query 170596 GACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAAC 170655 || | | || | || || || ||||||| |||||| || || |||||| | |||||| Sbjct 9700857 GATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACTCACAAC 9700916 Query 170656 TTCCCACTTGAC 170667 ||||| || ||| Sbjct 9700917 TTCCCTCTAGAC 9700928 >seq6 Length=27870862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 170397 TGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCA 170456 ||| || || || || | ||||||||||||||||| |||||||| |||| | | || Sbjct 8615184 TGGTTATTTGGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 8615125 Query 170457 CTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCAC 170516 ||||||| | ||| | | ||||||||| | || ||||| ||| | | |||||| | || Sbjct 8615124 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 8615065 Query 170517 AATGGCATTTAACCTTAA 170534 ||||| || || || || Sbjct 8615064 TATGGCTTTCAATCTAAA 8615047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582820183579200