Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq8 527 7e-145 seq10 389 4e-103 seq12 134 2e-26 seq6 104 3e-17 seq2 104 3e-17 seq4 86.0 7e-12 >seq8 Length=25958679 Score = 527 bits (584), Expect = 7e-145 Identities = 615/830 (74%), Gaps = 0/830 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 20128763 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 20128704 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || Sbjct 20128703 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 20128644 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || ||||| || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 20128643 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 20128584 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| ||||||| ||||| | |||||| ||||| || |||||| ||| Sbjct 20128583 ACAGGCCAAGCTACCAAGAAGAAGTGTAACGAACGAGAGTTGTTAAAACTAGCATATTGG 20128524 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || |||||||||||||| || || |||||| Sbjct 20128523 AAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 20128464 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || | ||||| || ||||| | ||| | | ||| Sbjct 20128463 CCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAG 20128404 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 20128403 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 20128344 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| |||||||||||||||||||| || |||||||| |||| ||| ||||| Sbjct 20128343 AACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTG 20128284 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||||||||| ||||| || | ||| || Sbjct 20128283 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAA 20128224 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | ||| ||||||| || || ||||| ||||| || || |||||| ||||| ||| Sbjct 20128223 TTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 20128164 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | |||||||| ||||||||||| | | | | |||||| Sbjct 20128163 CGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATGACAAGCTACACCAAGT 20128104 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| ||| || || | | | Sbjct 20128103 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGAT 20128044 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || || | || || || ||| | |||| | |||| Sbjct 20128043 GCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCA 20127984 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACG 84814 ||||| || || ||||||||||| | | | |||||| || ||||||| Sbjct 20127983 CCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACG 20127934 >seq10 Length=20731201 Score = 389 bits (430), Expect = 4e-103 Identities = 438/588 (74%), Gaps = 10/588 (2%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 18976228 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 18976169 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||||||||| || | | || ||||| || Sbjct 18976168 ATATCAGCCCAAGTATTAA----------TTGGCTATCAACTACATATTGGTTGAAATTG 18976119 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || ||||| || ||||| || |||| ||| | |||| |||||||| || || Sbjct 18976118 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAATGAACCAAATCCCTACT 18976059 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||| ||| ||||| || |||||| ||| Sbjct 18976058 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAAACTAGCATATTGG 18975999 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || |||||||||||||| || || |||||| Sbjct 18975998 AAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 18975939 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || | ||||| || ||||| | ||| | | ||| Sbjct 18975938 CCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCCGATCAAACTAGAG 18975879 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 18975878 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACACCT 18975819 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| ||||||||||||||||||| || |||||||| |||| ||| ||||| Sbjct 18975818 AACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAATACAATCATAAAGTTG 18975759 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||| ||||| ||||| || | ||| || Sbjct 18975758 AAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTGACCAATAGGGTAA 18975699 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 | | ||| ||||||| || |||||||| ||||| || || |||||| Sbjct 18975698 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 18975651 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 84315 TTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAAT 84374 ||||| || ||||| | ||| | | ||| || || | ||||||||||| ||| |||| Sbjct 9553448 TTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAAT 9553507 Query 84375 AGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTA 84434 || | || |||||||||||||| || || ||||||||||| |||||||||||||||||| Sbjct 9553508 AGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTA 9553567 Query 84435 TGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCA 84494 || || |||||||| |||| ||| ||||||| || || || || || | ||||| ||| Sbjct 9553568 TGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCA 9553627 Query 84495 TCAGAGAAAGAACCTTGCCCGAAAGGATA 84523 ||||||||| ||||| || | ||| || Sbjct 9553628 TCAGAGAAACTTCCTTGACCAATAGGGTA 9553656 >seq12 Length=23561512 Score = 134 bits (148), Expect = 2e-26 Identities = 218/311 (70%), Gaps = 2/311 (1%) Strand=Plus/Minus Query 84647 GAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGC 84706 |||||| | |||| || | |||||| || ||||| |||| ||| || || | | ||| Sbjct 9700623 GAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGC 9700564 Query 84707 TGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACC 84766 ||||||||||| | || || || | || || ||| |||| | |||| | || ||| Sbjct 9700563 AGCTTCCCAAATTGAGTAAAAGTGCAATCCGATCGCAGTAGAAGTAGGAATAATGGTACC 9700504 Query 84767 AGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAAT 84826 ||| || || ||||||||||| | | | |||||| || ||||||| ||||| ||||| Sbjct 9700503 AGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACGAATACCATCAAT 9700444 Query 84827 ATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAG 84885 ||| |||| || ||| | | ||| || || || || ||||| ||| || | | || | Sbjct 9700443 ATCTGCTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAAGG 9700385 Query 84886 TTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCC 84945 | || ||||| | | |||||||| |||| || | |||||| | ||| || | || Sbjct 9700384 TAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTATCC 9700325 Query 84946 AATCACAGAAG 84956 | | |||||| Sbjct 9700324 AGTTGCAGAAG 9700314 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || | ||||||||||| || ||| |||||||||| |||||||| | Sbjct 9700921 GGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAGATTAGCACGATTGATG 9700862 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | | ||||| || Sbjct 9700861 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTAGTTGAAATTG 9700802 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || ||||| || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 9700801 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 9700742 Query 84165 ACTGGCCAAGC 84175 || |||||||| Sbjct 9700741 ACAGGCCAAGC 9700731 >seq6 Length=27870862 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 84111 TTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGC 84170 || ||||| || ||||| || |||| ||| | ||||| |||||||| || || || ||| Sbjct 8615047 TTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 8615106 Query 84171 CAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATA 84230 |||||||||||||| ||||| | ||||||| ||||| || |||||| |||||||| Sbjct 8615107 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 8615166 Query 84231 AGACGACCGAAGTAGCC 84247 | || || || || || Sbjct 8615167 AATCGGCCCAAATAACC 8615183 >seq2 Length=33962743 Score = 104 bits (114), Expect = 3e-17 Identities = 122/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 83994 TGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCC 84053 || || |||||||||||||| ||||||||| |||| ||||| || | | ||| ||| Sbjct 14982190 TGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATCAGCC 14982249 Query 84054 CAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTC 84113 || |||| | ||| || ||||||||| || | | || ||||| || || ||||| Sbjct 14982250 CAAGTATAAATAACGCGACCTTGGCTATCAACTACA-GATGGTTGAAATTGAACCCATTT 14982308 Query 84114 AGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAAT 84157 ||||| || ||||| || |||| ||| | ||||| |||||||| Sbjct 14982309 AGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 14982352 >seq4 Length=30521686 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 84606 AGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGT 84665 |||||||| ||||||||||| ||| | | |||||| | |||||| | |||| || Sbjct 7243216 AGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGC 7243157 Query 84666 TGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAG 84725 | |||||| |||||||| |||| ||| || || | | ||| ||||||||||| || || Sbjct 7243156 TCATAAGGACCACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAA 7243097 Query 84726 AAATG 84730 || || Sbjct 7243096 AAGTG 7243092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571246335967440