Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-18 seq12 109 4e-18 seq2 107 2e-17 seq5 100 2e-15 seq6 87.8 1e-11 >seq3 Length=34446443 Score = 111 bits (122), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| || | ||| |||||||||| |||||| | || || ||| | | || Sbjct 32659881 AAGCAATTCTCTGCCGAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCT 32659940 Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| | || |||| || | | |||| || | ||||| || || || || || Sbjct 32659941 GAAGCTTACCTAGGATCAACT-GTGAAGAATGCTGTTGTCACTGTTCCTGCTTACTTCAA 32659999 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || || | || || ||||||||||| || |||||| || ||||||||| | || Sbjct 32660000 TGATTCCCAGAGGCAGGCAACTAAAGATGCCGGTGTTATTGCGGGTCTTAATGTTATGCG 32660059 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| |||||||| || || ||||||||| |||| ||||| ||||| || Sbjct 32660060 TATCATCAATGAGCCAACAGCTGCTGCAATTGCTTATGGTCTTGACAA 32660107 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || ||||| ||||| || |||||| Sbjct 515791 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 515732 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 515731 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 515672 Query 550520 GCATATGGA 550528 | |||||| Sbjct 515671 TCTTATGGA 515663 >seq12 Length=23561512 Score = 109 bits (120), Expect = 4e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 6698446 AAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAA 6698505 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||||||||| ||| | | ||||| || ||||| ||||| || |||| Sbjct 6698506 CAAAAGATGCTGGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTG 6698565 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 6698566 CTGCATCCCTTGCTTATGGTTTTGAGAA 6698593 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 |||| || || || || || || ||||||| | || ||||| || || ||| | | Sbjct 19720698 TAACAGTTCCTGCTTACTTCAACTACTCACAGAGGCAGGCTACCAAGGACGCTAGGGTCA 19720757 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||| || ||||| | ||||| |||||||| |||||||||||||| |||| |||| Sbjct 19720758 TTGCTGGCCTCAATGTCATGCGTATCATCAATGAGCCTACTGCTGCTGCCATTGCCTATG 19720817 Query 550527 GACTTGATAA 550536 | ||||| || Sbjct 19720818 GTCTTGACAA 19720827 >seq2 Length=33962743 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 30787381 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 30787322 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 30787321 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 30787262 Query 550520 GCATATGGA 550528 | |||||| Sbjct 30787261 TCTTATGGA 30787253 >seq5 Length=26652778 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || ||||||||||| |||||||||||| | ||| | Sbjct 11577287 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAA 11577346 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || || || ||||||| Sbjct 11577347 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTG 11577406 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 11577407 CAGCATCTTTGGCATATGGGTTTGAAAA 11577434 >seq6 Length=27870862 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || ||||| || ||||| ||| | ||| || |||||||| || || Sbjct 24977126 CCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAATCCGCGAGG 24977183 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || ||||| || || ||||| || || | |||||| ||||| ||||| Sbjct 24977184 GTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATG 24977243 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || || || ||||| || || || ||||||||||||| | || | | || Sbjct 24977244 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAG-GACTCAACCTC 24977302 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || ||||| || || || || || || ||||| Sbjct 24977303 GAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 24977347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029094086940820