Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq8 416 8e-112 seq10 298 2e-76 seq12 158 4e-34 >seq8 Length=25958679 Score = 416 bits (460), Expect = 8e-112 Identities = 604/846 (71%), Gaps = 8/846 (1%) Strand=Plus/Plus Query 25943 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTC 26002 ||||||| ||||| || | ||| | |||||||||||||| || || || || | | Sbjct 20127934 CGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 20127993 Query 26003 CCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGAC 26062 || | ||| || |||||| | || |||||||| || |||||||||| | | || Sbjct 20127994 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 20128053 Query 26063 GAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTA 26122 |||||| ||||||||||||| || ||| | || ||| | | ||||||||| | || ||| Sbjct 20128054 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 20128113 Query 26123 GCAG--CATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGA 26180 || |||||| || | |||||||||| || | | || || ||| | || |||| Sbjct 20128114 GCTTGTCATATG--GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 20128171 Query 26181 TATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTT 26240 | |||||||||| |||| || | | || ||| || || ||||| ||| ||| Sbjct 20128172 TTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTA 20128231 Query 26241 TCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 26300 | || ||||| ||||| |||||| |||||| | || || ||||||||||| ||||||| Sbjct 20128232 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 20128291 Query 26301 TGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTG 26360 || | |||||||| ||||| ||||| || || ||||| ||||| || ||| ||||| | Sbjct 20128292 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 20128351 Query 26361 CTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCAC 26420 |||| || ||||| || | || ||| ||||||||| || ||||| || || Sbjct 20128352 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTT 20128411 Query 26421 TTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATG 26480 | || ||||| || || | | || ||| | || || | ||||| ||||| | Sbjct 20128412 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 20128471 Query 26481 AAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATG 26540 ||||||| ||||||||||| || || || || || ||||| ||||||| || || |||| Sbjct 20128472 AAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATG 20128531 Query 26541 CGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTA-CTTGGCCGGTTGTTGGC 26599 | |||||||| ||| ||||| | || ||| |||||| || ||||||| || || || Sbjct 20128532 CTAGTTTTAACAACTCTCGTTCGTTACACTTC-TTCTTGGTAGCTTGGCCTGTAGTAGGG 20128590 Query 26600 ATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTT 26659 || ||| | || || | ||||| | || ||||| || || ||||| || || || || Sbjct 20128591 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTC 20128650 Query 26660 AACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAA 26718 ||||| || ||||| ||| | || | | || || ||| ||||||||| | | || Sbjct 20128651 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTGATATCATCAA 20128709 Query 26719 CCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778 ||| ||||| || || | ||||| |||||||| ||||||||||| ||||| || || || Sbjct 20128710 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 20128769 Query 26779 CTTAGC 26784 | |||| Sbjct 20128770 CCTAGC 20128775 >seq10 Length=20731201 Score = 298 bits (330), Expect = 2e-76 Identities = 425/600 (71%), Gaps = 10/600 (2%) Strand=Plus/Plus Query 26185 TGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGG 26244 |||||||||| |||| || | | || ||| || || ||||| |||| ||| | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 26245 ACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 26304 ||||| ||||| |||||| |||||| | || || ||||||||||| ||||||||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 26305 CGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGG 26364 |||||||| ||||| ||||| || || ||||| | ||| || ||| ||||| ||||| Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 26365 GGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTAT 26424 || ||||| || | || || ||||||||| || ||||| || || | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 26425 TGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGA 26484 | ||||| || || | | || ||| | || || | ||||| ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 26485 GACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAG 26544 ||| ||||||||||| || || || || || ||||| ||||||| || || ||||| || Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 26545 TTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATG 26604 |||||| ||| || ||| | || ||||| | ||| ||||||| || || || || || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 26605 GCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCA 26664 | | | || | ||||| | || ||||| || || ||||| || || || || ||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 26665 GTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGC 26724 | ||||| ||| || ||| ||| ||||||||| | | ||||| || Sbjct 18976131 ATATGTAGTTGAT----------AGCCAATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 26725 TAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||| || || | ||||| |||||||| ||||||||||| ||||| || || ||| |||| Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Score = 132 bits (146), Expect = 1e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 26233 TTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTT 26292 ||| ||| | || ||||| ||||| |||||| |||||| | || || ||||||||||| Sbjct 9553657 TTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 9553598 Query 26293 TAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGC 26352 ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || ||| Sbjct 9553597 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 9553538 Query 26353 TGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGG 26400 ||||| ||||| || ||||| || | || ||| ||||||||| || Sbjct 9553537 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 9553490 >seq12 Length=23561512 Score = 158 bits (174), Expect = 4e-34 Identities = 219/304 (72%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | |||||||| || || | ||||| || Sbjct 9700324 TGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 9700383 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || | ||| Sbjct 9700384 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGCAGA 9700442 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || ||||||| ||||| || | ||| | |||||||||||||| || || Sbjct 9700443 TATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTC 9700502 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || | | | || | |||| || |||||| | || |||||| | || |||||||| Sbjct 9700503 TGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGAAGC 9700562 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 9700563 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 9700622 Query 26110 CTTA 26113 |||| Sbjct 9700623 CTTA 9700626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146719747608432