Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq8 459 8e-125 seq10 338 2e-88 seq12 150 5e-32 seq4 80.6 8e-11 >seq8 Length=25958679 Score = 459 bits (508), Expect = 8e-125 Identities = 617/853 (72%), Gaps = 12/853 (1%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || | Sbjct 20128779 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 20128720 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || ||||||||||| | || | || | | |||||| || Sbjct 20128719 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 20128660 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || ||||| ||||| ||||||||||| | || | ||| || Sbjct 20128659 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 20128600 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || |||||||| ||| |||||| ||||| || || || Sbjct 20128599 GAACCAAATCCCTACTACAGGCCAAGCTACCAAGAAGAAGTGTAACGAACGAGAGTTGTT 20128540 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 ||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 20128539 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 20128480 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 |||||||| ||||| || ||| | || || | || |||||| |||| ||||| Sbjct 20128479 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 20128420 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 20128419 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 20128363 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || ||||| | ||| || || |||||||||||||| || || |||||||| Sbjct 20128362 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 20128303 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| |||||| |||||||| || || || || | ||||||||||||||||||||| Sbjct 20128302 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 20128243 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| |||| |||||| ||||| |||||| || || |||||||| |||||||| Sbjct 20128242 TCCTTGACCAATAGGGTAATTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATA 20128183 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625 || ||| ||||| || | |||||| || | |||| |||||||| | || |||| Sbjct 20128182 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 20128123 Query 36626 GT---AAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 36682 | ||||| | ||||| | ||||| | ||||| || | ||| || || || || Sbjct 20128122 ATGACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 20128066 Query 36683 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 36742 ||||||||||| || | | |||||||||||| |||||||| ||||| | ||||| || Sbjct 20128065 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 20128006 Query 36743 GTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 36802 || | || | || || |||||||| || |||||||| || ||||| || || Sbjct 20128005 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGA 20127946 Query 36803 GACAGGCTCACGA 36815 ||| |||||||| Sbjct 20127945 AACATGCTCACGA 20127933 >seq10 Length=20731201 Score = 338 bits (374), Expect = 2e-88 Identities = 441/607 (73%), Gaps = 16/607 (3%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || | Sbjct 18976244 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 18976185 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || ||||||||||| || | | |||||| || Sbjct 18976184 ATTAGCACGGTTGATGATATCAGCCCAAGTA----------TTAATTGGCTATCAACTAC 18976135 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 | || ||||| || || ||||| ||||| ||||||||||| | || | ||| | Sbjct 18976134 ATATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAAT 18976075 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||||| |||||| |||||| || || || Sbjct 18976074 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTT 18976015 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 ||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 18976014 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 18975955 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 |||||||| ||||| || ||| | || || | || |||||| |||| ||||| Sbjct 18975954 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 18975895 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| || |||| || ||||||||| |||| | || || Sbjct 18975894 CCCGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTAAATAGGGAACCGCC 18975838 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || ||||| | ||| || || ||||||||||||| || || |||||||| Sbjct 18975837 GAATACACCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTG 18975778 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| |||||| |||||||| || || || || | ||||||||||||| ||||||| Sbjct 18975777 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACT 18975718 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| |||| |||||| | ||||| |||||| || ||||||||||| |||||||| Sbjct 18975717 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 18975658 Query 36566 AGCTACA 36572 || ||| Sbjct 18975657 TGCAACA 18975651 Score = 158 bits (174), Expect = 4e-34 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 9553490 CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 9553549 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 |||||||||||||| || || |||||||| || |||| |||||| |||||||| || || Sbjct 9553550 GGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 9553609 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTA 36523 || || | ||||||||||||||||||||| ||||| |||| |||||| Sbjct 9553610 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTA 9553656 >seq12 Length=23561512 Score = 150 bits (166), Expect = 5e-32 Identities = 214/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| || | ||| || || || || ||||||||||| || | | |||| Sbjct 9700622 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCA 9700563 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||| |||| ||| ||||| | ||||| || | || | || | || | ||| Sbjct 9700562 GCTTCCCAAATTGAGTAAAAGTGCAATCCGATCGCAGTAGAAGTAGGAATAATGGTACCA 9700503 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 ||||| || |||||||| || ||||| || || ||| |||||||||||||||| ||| Sbjct 9700502 GAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACGAATACCATCAATA 9700443 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887 || | ||||| ||||| | || || || | |||| | | ||| || || | | | Sbjct 9700442 TCTGCTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA 9700383 Query 36888 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 36947 |||||||| | || |||||||| || | || || ||||| | || || || | |||| Sbjct 9700382 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTATCCAG 9700323 Query 36948 T 36948 | Sbjct 9700322 T 9700322 Score = 89.7 bits (98), Expect = 2e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| | ||||| || || || ||| |||| || | Sbjct 9700937 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAG 9700878 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | ||||| || | || ||||||||||| | || | || | | |||||| || Sbjct 9700877 ATTAGCACGATTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 9700818 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 36130 || | ||||| || || ||||| ||||| ||||||||||| Sbjct 9700817 AGATTAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGT 9700776 >seq4 Length=30521686 Score = 80.6 bits (88), Expect = 8e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 36601 AACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAA 36660 |||| |||||||| | || |||| ||| | | ||||| | ||||| | |||| Sbjct 7243221 AACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 7243162 Query 36661 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 36720 | || | ||| || || || || ||||||||||| || | | |||||||||||| |||| Sbjct 7243161 TTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTG 7243102 Query 36721 GGTAGAAGTGAAGACCGATTGC 36742 |||| ||||| | ||||| || Sbjct 7243101 GGTAAAAGTGCAATCCGATCGC 7243080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150447578585572