Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq8 464 2e-126 seq10 370 3e-98 seq12 134 4e-27 seq2 104 7e-18 seq6 82.4 2e-11 >seq8 Length=25958679 Score = 464 bits (514), Expect = 2e-126 Identities = 699/991 (71%), Gaps = 27/991 (3%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 20128779 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 20128720 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| ||||| Sbjct 20128719 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 20128663 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| ||||| ||||||||||| || || | || Sbjct 20128662 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 20128603 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||| |||||| ||||| ||| || Sbjct 20128602 AGTGAACCAAATCCCTACTACAGGCCAAGCTACCAAGAAGAAGTGTAACGAACGAGAGTT 20128543 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 |||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| || Sbjct 20128542 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 20128483 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| || ||||||||||| || ||| | || || | || ||| |||| || Sbjct 20128482 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 20128423 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | ||| || || | |||||||||||| ||| | | || || Sbjct 20128422 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 20128363 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | |||||| || |||||||||||||| || || |||||||| Sbjct 20128362 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 20128303 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||||||||| ||||||||||| || || | ||||||||||||| |||||| Sbjct 20128302 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 20128243 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAAT 5786 ||| || || | |||||| || || || | ||||| | || ||||| || ||||||| Sbjct 20128242 TCCTTGACCAATAGGGTAATTCAAGAAAACAGCAGTAG-CAGCCGCAACAGGAGCTGAAT 20128184 Query 5787 ATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCA 5846 |||| || |||||| || ||||| || | | | |||| |||||||| | || |||| Sbjct 20128183 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 20128124 Query 5847 AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGT 5906 | | || | ||||| | |||||| | || | || | || || || ||||||| Sbjct 20128123 TATGACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 20128064 Query 5907 AAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | | ||| ||||| | | || |||||||| || || || ||||| || || || || Sbjct 20128063 ATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCG 20128004 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || ||| || || || || |||||||| || |||| | | || | | Sbjct 20128003 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAA 20127944 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | |||| || || | || |||| | ||| || | |||||| Sbjct 20127943 C----------ATGC--TC-------ACGAGAGGGGCAGTGATGAAGGCGATAATAAATA 20127903 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 || ||||||||| | | | || || || || ||||| ||||| || | || || | Sbjct 20127902 CAAAAGTTGCGGTCGATAAGGTAGGGATTATCAAAACACCGAACCATCCGATGTAAAGAC 20127843 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | ||||||||| | ||||| ||||| Sbjct 20127842 GGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 20127812 >seq10 Length=20731201 Score = 370 bits (410), Expect = 3e-98 Identities = 451/609 (74%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 18976244 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 18976185 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 || |||||||| | || ||| |||||||| || || |||| ||||| || Sbjct 18976184 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAA---TTG----GCTA---TCAACTAC 18976135 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 | || ||||| || || ||||| ||||| ||||||||||| || || | || | Sbjct 18976134 ATATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAAT 18976075 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||| |||||| |||||| || ||||| Sbjct 18976074 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTT 18976015 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 ||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 18976014 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 18975955 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 || ||||||||||| || ||| | || || | || ||| |||| ||||| Sbjct 18975954 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 18975895 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| || | | || ||||| Sbjct 18975894 CCCGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAA 18975835 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| ||||| | |||||| || ||||||||||||| || || ||||||||||| Sbjct 18975834 TACACCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAA 18975775 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| ||||||||||| || || | ||||||||||||| ||||||||| Sbjct 18975774 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCC 18975715 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || || | |||||| | || || || | |||| || || ||||| || |||||||||| Sbjct 18975714 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATG 18975656 Query 5790 CTAC-GCAA 5797 | || |||| Sbjct 18975655 CAACAGCAA 18975647 Score = 167 bits (184), Expect = 7e-37 Identities = 137/167 (82%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || |||||||| ||||| ||||| | |||||| || Sbjct 9553490 CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 9553549 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 |||||||||||||| || || |||||||||||||| | ||||||||| ||||||||||| Sbjct 9553550 GGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 9553609 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTA 5745 || || | ||||||||||||| ||||||||| || || | |||||| Sbjct 9553610 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTA 9553656 >seq12 Length=23561512 Score = 134 bits (148), Expect = 4e-27 Identities = 202/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950 || || || |||||||| | ||| ||||| | | || |||||||| || | || ||| Sbjct 9700601 TAAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGAGTAAAAG 9700542 Query 5951 TGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAG 6010 || || || || || | || | || | || || || || || || |||||||| || Sbjct 9700541 TGCAATCCGATCGCAGTAGAAGTAGGAATAATGGTACCAGAGATAATATTGTTTCCGTAA 9700482 Query 6011 AGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACG 6070 |||| | | || | || | ||||| || || || || || |||| || ||||| | | Sbjct 9700481 AGTAAAAAACCAGAAACATGCTCACGAATACCATCAATATCTGCTGGAGGGGCAGCGATG 9700422 Query 6071 AATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAAC 6130 || || | |||||| ||| ||||||||| || | | || ||||| || ||||||||| Sbjct 9700421 AAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAAC 9700362 Query 6131 CACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || | || || ||||| | ||||||||| | ||||| ||||| Sbjct 9700361 CATCCAATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 9700315 Score = 122 bits (134), Expect = 3e-23 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||| ||| |||||||| |||||| |||||||||| Sbjct 9700937 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAG 9700878 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || ||||| || | || ||| |||||||| || | | ||| |||| ||||| Sbjct 9700877 ATTAGCACGATTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 9700821 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || | ||||| || || ||||| ||||| ||||||||||| || || | || Sbjct 9700820 TACAGATTAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 9700761 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAG 5396 || | ||| || | || || ||||||| Sbjct 9700760 AGTGAACCAAATCCCTACTACAGGCCAAG 9700732 >seq2 Length=33962743 Score = 104 bits (114), Expect = 7e-18 Identities = 111/144 (77%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 5212 GTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATC 5271 || ||||||||| ||||||||||||||||||||| |||| || |||||||| | || ||| Sbjct 14982186 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14982245 Query 5272 TGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAA 5328 |||||||| || | | ||| |||| ||||| || || || ||||| || || Sbjct 14982246 AGCCCAAGTATAAATAACGCGACCTTGGCTA---TCAACTACAGA-TGGTTGAAATTGAA 14982301 Query 5329 GCCGTTAAGATTAAAAGCCATAGT 5352 || || ||||| ||||||||||| Sbjct 14982302 CCCATTTAGATTGAAAGCCATAGT 14982325 >seq6 Length=27870862 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 5333 TTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGC 5392 || ||||| ||||||||||| || || | || || | ||| || | || || ||| Sbjct 8615047 TTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 8615106 Query 5393 CAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATG 5452 |||| ||||| |||||| |||||| ||| |||||||| |||||||| |||||||| Sbjct 8615107 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 8615166 Query 5453 AGTCTCCCAAAGTAGCCA 5470 | || || || || ||| Sbjct 8615167 AATCGGCCCAAATAACCA 8615184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152642679057948