Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq8 443 6e-120 seq10 336 7e-88 seq12 147 7e-31 >seq8 Length=25958679 Score = 443 bits (490), Expect = 6e-120 Identities = 611/849 (72%), Gaps = 12/849 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 20128775 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 20128716 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 20128715 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 20128656 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| ||||| ||||||||||| | || | ||| || | | Sbjct 20128655 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 20128596 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || |||||||| ||| |||||| ||||| ||| || ||||| Sbjct 20128595 CAAATCCCTACTACAGGCCAAGCTACCAAGAAGAAGTGTAACGAACGAGAGTTGTTAAAA 20128536 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 20128535 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 20128476 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || |||||| |||| ||||| | Sbjct 20128475 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 20128416 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 20128415 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 20128359 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || |||||||||||||| || || |||||||| || Sbjct 20128358 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 20128299 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || | ||||||||||||||||||||| ||| Sbjct 20128298 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 20128239 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| |||||| ||||| |||||| || || |||||||| |||||||| || Sbjct 20128238 TGACCAATAGGGTAATTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATGCA 20128179 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT-- 26107 ||| ||||| || | ||| || || | |||| |||||||| | || |||| | Sbjct 20128178 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATGA 20128119 Query 26108 -AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATAC 26166 ||||| | || | | ||||| | ||||| || | ||| || || || || || Sbjct 20128118 CAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTAT 20128062 Query 26167 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 26226 |||||||| || | | |||||||||||| |||||||| ||||| | ||||| || | Sbjct 20128061 AACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCA 20128002 Query 26227 GATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 26286 || | || | || || || ||||| || |||||||| || ||||| || || ||| Sbjct 20128001 GAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACA 20127942 Query 26287 GGCTCACGA 26295 |||||||| Sbjct 20127941 TGCTCACGA 20127933 >seq10 Length=20731201 Score = 336 bits (372), Expect = 7e-88 Identities = 438/603 (73%), Gaps = 16/603 (3%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 18976240 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 18976181 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| || | | |||||| || | Sbjct 18976180 GCACGGTTGATGATATCAGCCCAAGTA----------TTAATTGGCTATCAACTACATAT 18976131 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| ||||| ||||||||||| | || | ||| | | | Sbjct 18976130 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAATGAAC 18976071 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||| |||||| |||||| || || ||||| Sbjct 18976070 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAAA 18976011 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 18976010 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 18975951 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || |||||| |||| ||||| | Sbjct 18975950 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCCG 18975891 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| |||| | || |||||| Sbjct 18975890 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTAAATAGGGAACCGCCGAAT 18975834 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || ||||||||||||| || || |||||||| || Sbjct 18975833 ACACCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAAT 18975774 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || | ||||||||||||| ||||||| ||| Sbjct 18975773 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCT 18975714 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| |||||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 18975713 TGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 18975654 Query 26050 ACA 26052 ||| Sbjct 18975653 ACA 18975651 Score = 158 bits (174), Expect = 4e-34 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 9553490 CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 9553549 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 |||||||||||||| || || |||||||| || |||| |||||| |||||||| || || Sbjct 9553550 GGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 9553609 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTA 26003 || || | ||||||||||||||||||||| ||||| |||| |||||| Sbjct 9553610 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTA 9553656 >seq12 Length=23561512 Score = 147 bits (162), Expect = 7e-31 Identities = 213/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| || | ||| || || || || || |||||||| || | | |||| Sbjct 9700622 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCA 9700563 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||| |||| ||| ||||| | ||||| || |||| | || | || | || Sbjct 9700562 GCTTCCCAAATTGAGTAAAAGTGCAATCCGATCGCAGTAGAAGTAGGAATAATGGTACCA 9700503 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 ||||| || |||||||| || ||||| || || ||| |||||||||||||||| ||| Sbjct 9700502 GAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACGAATACCATCAATA 9700443 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || | ||||| ||||| | || || || | |||| | | ||| || || | | | Sbjct 9700442 TCTGCTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA 9700383 Query 26368 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 26427 |||||||| | || |||||||| || | || || ||||| | || || || | |||| Sbjct 9700382 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTATCCAG 9700323 Query 26428 T 26428 | Sbjct 9700322 T 9700322 Score = 87.8 bits (96), Expect = 5e-13 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| | ||||| || || || ||| |||| || | | Sbjct 9700933 GCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAGATTA 9700874 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| || | || ||||||||||| | || | || | | |||||| || || Sbjct 9700873 GCACGATTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 9700814 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGT 25610 | ||||| || || ||||| ||||| ||||||||||| Sbjct 9700813 TAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGT 9700776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151986708800168