Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05]
3,818 sequences; 339,177,042 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq5 109 4e-19
>seq5
Length=26652778
Score = 109 bits (120), Expect = 4e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331
||| || || || || || |||||||| || | || | | |||| || | ||||| ||
Sbjct 7980605 GGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCCTCGAGCTGCTTGCC 7980664
Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391
||||| |||| ||||| ||||| || ||||||| || || || ||||| ||| |||
Sbjct 7980665 AGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCCTGAATCTTTGCTTT 7980724
Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451
||| | || | ||||| |||| || || || || || | ||||||||||| || ||
Sbjct 7980725 TACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTTGCCGGTCAATGT 7980784
Query 101452 TTTTACAAATATCTGCAT 101469
|| ||||| || |||||
Sbjct 7980785 CTTGACAAAGATTTGCAT 7980802
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|||| ||||||||||| || || || |||||||| || || | | | | || ||
Sbjct 7980822 ACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCCAGGGCGCGTCCGTCCTCG 7980881
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || || || ||||| || || | || ||||| || || || |||
Sbjct 7980882 AGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGGATGCCCTCCTTGTCCTGA 7980941
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | || ||||| | || || ||||| || | || ||
Sbjct 7980942 ATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTTT 7981001
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
||||| | || || ||||| |||||||||
Sbjct 7981002 CCGGTCAGGGTCTTGACAAAAATCTGCATG 7981031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396259960423026
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |