Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq8 502 3e-137 seq10 381 6e-101 seq12 138 1e-27 seq2 107 2e-18 seq6 87.8 2e-12 >seq8 Length=25958679 Score = 502 bits (556), Expect = 3e-137 Identities = 620/843 (74%), Gaps = 10/843 (1%) Strand=Plus/Plus Query 162648 TGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTC 162707 |||| | |||| | || || || ||||| || ||||||||||| | |||||| ||| Sbjct 20127942 TGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTC 20128001 Query 162708 AAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTT 162767 || || || | ||||| || || || |||||||| ||| || ||||||||||||| Sbjct 20128002 TGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTT 20128061 Query 162768 GTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAG--CA 162825 || ||||| || |||| | || | || | |||||| | | || | | || Sbjct 20128062 ATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCA 20128121 Query 162826 TACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTT 162885 || || |||||| |||||||||| || ||| | ||||||||||||||||| |||| Sbjct 20128122 TA-TG-GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTT 20128179 Query 162886 GCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAA 162945 ||||| || || || || | || || ||||| |||||| || ||| | |||||| Sbjct 20128180 GCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAA 20128239 Query 162946 GGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTG 163005 || ||||||||| | |||||| | || || ||||||||||| |||| ||| | || Sbjct 20128240 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTA 20128299 Query 163006 TTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTA 163065 ||||| |||||||| |||||||| ||||| || || || ||| | || || || |||||| Sbjct 20128300 TTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTA 20128359 Query 163066 TTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGA 163125 ||||| ||||| || || ||||||||||| ||||| | || || ||| | | ||||| Sbjct 20128360 TTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 20128419 Query 163126 GAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACT 163185 ||||| ||||| | || || || | ||||| | || || ||||| ||||||||| Sbjct 20128420 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 20128479 Query 163186 TACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTC 163245 || || ||||| || |||||||| || ||||| || || |||||||| ||||| ||| Sbjct 20128480 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 20128539 Query 163246 AACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTC 163305 |||||||| ||||| | ||||||||| | | || | ||||| || | || |||||| Sbjct 20128540 AACAACTCTCGTTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTC 20128599 Query 163306 ACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCC 163365 ||||| | ||| | |||||||| ||||| || ||||| ||||| ||||||||||| Sbjct 20128600 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 20128659 Query 163366 GTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCA 163422 || ||||| | |||| | || ||| ||||||||| |||||| | ||| | || Sbjct 20128660 GTAGTTGATAGCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 20128716 Query 163423 GGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 163482 |||||||||||||| |||||||| |||||||||||||||||||| || ||||| ||| Sbjct 20128717 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 20128776 Query 163483 GCT 163485 ||| Sbjct 20128777 GCT 20128779 >seq10 Length=20731201 Score = 381 bits (422), Expect = 6e-101 Identities = 447/604 (74%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 162882 TGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGG 162941 ||||||||| || || || || | || || ||||| |||||| | || ||| | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 162942 TCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTT 163001 |||||| ||||| ||| | |||||| | || || ||||||||||| |||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 163002 CGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGG 163061 || ||||| ||||| || |||||||| ||||| | || || ||| | || || || || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 163062 TGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTAT 163121 ||||||||| ||||| || |||||||||||||| ||||| | || || ||| | | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 163122 CAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGA 163181 | | ||||| ||||| | || || || | ||||| | || || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 163182 GACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATC 163241 |||||| || ||||| || |||||||| || ||||| || || |||||||| ||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| |||||||| || || | ||||||||| | ||||| | ||||| || | || || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||| ||| | ||| | |||||||| ||||| || ||||| ||||| |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 163362 ATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGC 163421 || || ||||| | | | ||| ||||||||| |||||| | ||| | || Sbjct 18976131 ATATGTAGTTGA------TAGCCA----ATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 163422 AGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 163481 |||||||||||||| |||||||| |||||||||||||||||||| || ||||| || Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Query 163482 TGCT 163485 |||| Sbjct 18976241 TGCT 18976244 Score = 159 bits (176), Expect = 4e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 162931 TATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTT 162990 || ||| | |||||||| ||||||||| | |||||| | || || ||||||||||| Sbjct 9553656 TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 9553597 Query 162991 AACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATT 163050 |||| ||| | || ||||| |||||||| |||||||| ||||| || || || ||| | Sbjct 9553596 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 9553537 Query 163051 GGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACT 163110 || || || ||||||||||| ||||| || || ||||||||||| ||||| | || || Sbjct 9553536 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACC 9553477 Query 163111 TCTTCTCTTATCAGAGAAACTACTGA 163136 ||| | | ||||| ||||| ||||| Sbjct 9553476 TCTAGTTTGATCAGGGAAACCACTGA 9553451 >seq12 Length=23561512 Score = 138 bits (152), Expect = 1e-27 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 9700357 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATC 9700416 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || ||||| || || ||||||| ||||| |||||||| | || | |||| | |||| Sbjct 9700417 GCCTTCATCGCTGCCCCTCCAGCAGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTT 9700476 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 | || || || ||||| || ||||||||| | | |||||| ||| | ||| || || Sbjct 9700477 TTACTTTACGGAAACAATATTATCTCTGGTACCATTATTCCTACTTCTACTGCGATCGGA 9700536 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || | || |||||||| ||| || ||||||||||||| || ||||| || Sbjct 9700537 TTGCACTTTTACTCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGT 9700596 Query 162781 CCTT 162784 |||| Sbjct 9700597 CCTT 9700600 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 163285 CCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAAC 163344 ||||| || | || ||||||||||| | ||| | |||||||| ||||| || ||| Sbjct 9700737 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 9700796 Query 163345 GGTTTCAACTTCAACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGG 163401 || ||||| |||||| |||| || ||||| || |||| | || ||| ||||||| Sbjct 9700797 GGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGC---GTTATTAATACTTGG 9700853 Query 163402 GCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 163461 || |||||| | || | || |||||||||| ||| || ||||| |||||| ||||| Sbjct 9700854 GCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACTCAC 9700913 Query 163462 AACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || ||||| |||||| Sbjct 9700914 AACTTCCCTCTAGACCTAGCTGCT 9700937 >seq2 Length=33962743 Score = 107 bits (118), Expect = 2e-18 Identities = 129/171 (75%), Gaps = 7/171 (4%) Strand=Plus/Minus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||||||||| | ||| | |||||||| ||||| || || || ||||| ||| Sbjct 14982352 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14982293 Query 163357 AACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 ||||| || || ||||| || |||| | || ||| ||||||||| |||||| | Sbjct 14982292 AACCA-TCTGTAGTTGATAGCCAAGGTCGC---GTTATTTATACTTGGGCTGATATCATC 14982237 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464 ||| | ||| |||| ||||||||| |||||||| |||||||||||| || Sbjct 14982236 AACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14982186 >seq6 Length=27870862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 163206 TGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCA 163265 ||| || || || || || |||||||| ||||| ||| |||||||| ||||| | || Sbjct 8615184 TGGTTATTTGGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 8615125 Query 163266 CTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAAC 163325 ||||||| | ||||| | ||||| || | || ||||||||||| | ||| | || Sbjct 8615124 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 8615065 Query 163326 TATGGCATTCAACCTTAA 163343 |||||| ||||| || || Sbjct 8615064 TATGGCTTTCAATCTAAA 8615047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553058404027920