Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 212 1e-49 >seq6 Length=27870862 Score = 212 bits (234), Expect = 1e-49 Identities = 499/740 (67%), Gaps = 32/740 (4%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| ||||| || ||| |||||| || | || | Sbjct 1266978 ACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGT 1267037 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || |||||| || ||||| |||||||| |||||||| ||||||| Sbjct 1267038 TCATGTCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCG 1267097 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG 25771 | || | ||||| ||| |||| | ||||||| | ||||||||| |||| || Sbjct 1267098 AGAACATCCACTCGGAGATGTACTC---GCTTCTGCTCGAGACGTACATCCGCGACGACG 1267154 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||||| || || || || | |||||||| | | ||| | | | ||||| Sbjct 1267155 TCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCG 1267214 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||||| |||||| || || ||||||| || ||||||||| || ||| Sbjct 1267215 ACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCGCC 1267270 Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || ||||| ||||| ||| ||||| || |||| ||||||||||||||| Sbjct 1267271 TTCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCG-CCATCTTCTGGCTCA 1267328 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || | |||| |||||| || || ||| ||||||||||||||| | | |||||| Sbjct 1267329 AGAAG-CGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 1267387 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||||||||| | || || |||||||| |||||| | || | | | | | || || Sbjct 1267388 GGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGC-AAGCTCGA 1267443 Query 26068 CAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | || || |||| | ||| || || || ||||| ||||||| |||||| Sbjct 1267444 CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTG 1267503 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | || |||||| | ||||||||||| ||||| || Sbjct 1267504 CGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGA 1267563 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 || || ||||||| ||||| || | ||| || || ||| | |||| || || Sbjct 1267564 GTTCGTCGCCGACCGGCTGCTCATGGC-GCTCGG--GTGCAAGAAGATGTACAACGT-CG 1267619 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||||||||||| ||||| ||| || || | || |||||||||||||| || Sbjct 1267620 CC-AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAG 1267678 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 1267679 AAGCGCGTCGGCGACTACCA 1267698 Score = 199 bits (220), Expect = 7e-46 Identities = 569/860 (66%), Gaps = 33/860 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| || || ||| | || || Sbjct 7611171 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTC 7611112 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| | ||| || ||| ||||||| || || || Sbjct 7611111 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCC 7611052 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 7611051 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 7610992 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||| |||||||| |||||||| |||||| Sbjct 7610991 TTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATC 7610932 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| |||| Sbjct 7610931 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 7610872 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAG-CATCAAGAGGAAGGCGCG 25832 |||| || |||||||| | |||||||| ||| ||| | | | | ||||| Sbjct 7610871 GAGAAGGACCGGCTGTTCCGCGCCATCGA-CACCGTCCCGGCCGTGCGCCGCAAGGCCGA 7610813 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || || |||||| || | |||||| || || |||| Sbjct 7610812 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCT 7610757 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | | |||| || ||||| ||||| ||| || || || ||| ||||||||||||||||| Sbjct 7610756 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCTCAA 7610699 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || |||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 7610698 GAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 7610639 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || ||| | || || |||||||| |||||| | || | | | | ||| | || | Sbjct 7610638 CCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GA 7610585 Query 26070 AGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 ||| | |||| | ||| || || || || || ||||||| |||||| Sbjct 7610584 CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTG 7610525 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||||| ||||| || Sbjct 7610524 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 7610465 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 || || ||||||| || || || | ||| || || || ||| | |||| || || Sbjct 7610464 GTTCGTCGCCGACCGCCTCCTCATGGC-GCTCGG-CT-GCAAGAAGATGTACAACGT-CG 7610409 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||| ||||||| ||||| |||||| || | || |||||||||||||| || Sbjct 7610408 CC-AACCCCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGACCAACTTCTTCGAG 7610350 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 7610349 AAGCGCGTCGGCGACTACCA 7610330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928800470881920