Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq8 446 5e-121 seq10 325 1e-84 seq12 159 1e-34 seq4 80.6 8e-11 >seq8 Length=25958679 Score = 446 bits (494), Expect = 5e-121 Identities = 619/853 (73%), Gaps = 18/853 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 20128776 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 20128717 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 20128716 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 20128659 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| |||||||| || ||||| ||||||||||| || || | || || Sbjct 20128658 -GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 20128600 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGT 18069 | ||| || | || |||||||| |||||||||| |||| || | | |||| Sbjct 20128599 GAACCAAATCCCTACTACAGGCCAAGCTACCAAGAAGAAGTGTA-ACGAACGAGAGTTGT 20128541 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 |||| |||||||| |||||||| | || ||||| || |||||||| || |||||||||| Sbjct 20128540 TAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTAT 20128481 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | |||||||| ||||| |||||| | || || | || ||| || ||||| |||| Sbjct 20128480 AAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTT 20128421 Query 18190 CTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 | || || || | |||| || |||| || ||||||||| ||||| | || | Sbjct 20128420 CCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGC 20128364 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 ||||||| || || ||||| | ||| || || |||||||||||||| || || || || | Sbjct 20128363 CGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCT 20128304 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAAC 18366 ||||||| | ||| || ||||||||||| || || | |||||||||||||||||||| Sbjct 20128303 GGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAAC 20128244 Query 18367 TCCCTTGTCCAAAAGGATAA-ACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGA 18424 | ||||| |||| ||| ||| | ||||| || | || | ||||| || || || || || Sbjct 20128243 TTCCTTGACCAATAGGGTAATTCAAGAAA-ACAGCAGTA-GCAGCCGCAACAGGAGCTGA 20128186 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| |||||| || |||||||| || | |||| |||||||| | || || Sbjct 20128185 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACC 20128126 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||| | | || | || | | ||||| | ||||| || | ||| || || || || Sbjct 20128125 CATATGACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 20128066 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 ||||||||||| || | | |||||||||||| |||||||| ||||| | ||||| || Sbjct 20128065 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 20128006 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || |||||||| || ||||| || || Sbjct 20128005 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGA 20127946 Query 18665 GACAGGCTCACGA 18677 ||| |||||||| Sbjct 20127945 AACATGCTCACGA 20127933 >seq10 Length=20731201 Score = 325 bits (360), Expect = 1e-84 Identities = 447/613 (73%), Gaps = 20/613 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 18976241 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 18976182 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||||| | |||||||| ||| | ||| | || || | || | Sbjct 18976181 AGCACGGTTGATGATATCAGCCCAAGTATTAA----TTGGCTATCAACTAC----AT--A 18976132 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| |||||||| || ||||| ||||||||||| || || | || | | Sbjct 18976131 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAATGAA 18976072 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||||||||||||||| |||| | | |||||||| Sbjct 18976071 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAA 18976012 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| || Sbjct 18976011 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 18975952 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 |||||| ||||| |||||| | || || | || ||| || ||||| ||||| | Sbjct 18975951 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCC 18975892 Query 18194 AAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | |||| || |||| || ||||||||| |||| | || ||||| Sbjct 18975891 GATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTAAATAGGGAACCGCCGAA 18975835 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| | ||| || || ||||||||||||| || || || || ||||| Sbjct 18975834 TACACCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAA 18975775 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || ||||||||||| || || | ||||||||||||| ||||||| || Sbjct 18975774 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCC 18975715 Query 18371 TTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| ||| |||| | ||||| || | || | |||||||| || || || ||||| Sbjct 18975714 TTGACCAATAGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 18975657 Query 18429 GCAACACAAATCC 18441 |||||| ||||| Sbjct 18975656 GCAACAGCAATCC 18975644 Score = 141 bits (156), Expect = 3e-29 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || |||||||| || || ||||| | ||| || || Sbjct 9553490 CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 9553549 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 |||||||||||||| || || || || |||||||| | ||| || ||||||||||| Sbjct 9553550 GGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 9553609 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAA 18386 || || | ||||||||||||||||||||| ||||| |||| ||| ||| Sbjct 9553610 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAA 9553657 >seq12 Length=23561512 Score = 159 bits (176), Expect = 1e-34 Identities = 216/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| || | ||| || || || || ||||||||||| || | | |||| Sbjct 9700622 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCA 9700563 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||| |||| ||| ||||| | ||||| || |||| | || | || | || Sbjct 9700562 GCTTCCCAAATTGAGTAAAAGTGCAATCCGATCGCAGTAGAAGTAGGAATAATGGTACCA 9700503 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || |||||||| || ||||| || || ||| |||||||||||||||| || Sbjct 9700502 GAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACGAATACCATCAATA 9700443 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || | ||||| ||||| | || || || | |||| | | || |||||| || | | | Sbjct 9700442 TCTGCTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA 9700383 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809 |||||||| | || |||||||| || | ||| || ||||| | || || || | |||| Sbjct 9700382 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTATCCAG 9700323 Query 18810 T 18810 | Sbjct 9700322 T 9700322 Score = 91.5 bits (100), Expect = 4e-14 Identities = 118/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| |||| |||||| ||||| || ||| | | ||||| || Sbjct 9700934 AGCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAGATT 9700875 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | |||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 9700874 AGCACGATTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 9700817 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGT 17992 |||| |||||| |||||||| || ||||| ||||||||||| Sbjct 9700816 -GATTAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGT 9700776 >seq4 Length=30521686 Score = 80.6 bits (88), Expect = 8e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 18463 AACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAA 18522 |||| |||||||| | || ||||| ||| || | || | | ||||| | |||| Sbjct 7243221 AACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 7243162 Query 18523 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 18582 | || | ||| || || || || ||||||||||| || | | |||||||||||| |||| Sbjct 7243161 TTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTG 7243102 Query 18583 GGTAGAAGTGAAGACCGATTGC 18604 |||| ||||| | ||||| || Sbjct 7243101 GGTAAAAGTGCAATCCGATCGC 7243080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151311539412892