Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq8 437 3e-118 seq10 329 9e-86 seq12 111 5e-20 seq6 93.3 1e-14 seq4 86.0 2e-12 >seq8 Length=25958679 Score = 437 bits (484), Expect = 3e-118 Identities = 561/771 (73%), Gaps = 2/771 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || | ||||| || Sbjct 20128775 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 20128716 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | || | | | | | |||| Sbjct 20128715 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 20128656 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | ||||||||||| ||| | || | |||| ||| Sbjct 20128655 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 20128596 Query 21651 CAAATACCTACAACAGGCCAGGC-AGCAAGAAAGAAATGAAGACTACGGGAATTATTAAA 21709 ||||| ||||| |||||||| || | |||||| ||| || | ||| || || ||||| Sbjct 20128595 CAAATCCCTACTACAGGCCAAGCTACCAAGAA-GAAGTGTAACGAACGAGAGTTGTTAAA 20128537 Query 21710 GCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGT 21769 ||||||||||||||||| | || |||||||| || ||||| || |||||||| ||||| Sbjct 20128536 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 20128477 Query 21770 CTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACG 21829 |||||||||||||||||| ||||||| | || || | | |||||| || || | Sbjct 20128476 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 20128417 Query 21830 AATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATAC 21889 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 20128416 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 20128357 Query 21890 GCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACAC 21949 || || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| || Sbjct 20128356 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 20128297 Query 21950 CAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTG 22009 | ||| ||||||| || || ||||| || || |||||| ||||||| ||| || || Sbjct 20128296 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 20128237 Query 22010 TCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAAC 22069 |||| || ||| | ||| |||||||| ||||| || |||||||| || || ||||| Sbjct 20128236 ACCAATAGGGTAATTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATGCAAC 20128177 Query 22070 AAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGC 22129 | ||||| || | ||| || || || | || ||||||||||| || ||||| | | Sbjct 20128176 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATGACA 20128117 Query 22130 AAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCA 22189 | || |||| | |||||| | || | || | | |||||||| ||||| | ||| Sbjct 20128116 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 20128057 Query 22190 TTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGC 22240 ||||||| | |||||||||||||||||||| ||||| | |||||| || Sbjct 20128056 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 20128006 >seq10 Length=20731201 Score = 329 bits (364), Expect = 9e-86 Identities = 433/600 (72%), Gaps = 10/600 (2%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || | ||||| || Sbjct 18976240 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 18976181 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | |||| | | | || Sbjct 18976180 GCACGGTTGATGATATCAGCCCAAGTATTAAT----TGGCTATCAACTAC------ATAT 18976131 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | ||||||||||| ||| | || | ||| ||| Sbjct 18976130 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAATGAAC 18976071 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||| ||||| |||||||| ||||| | ||||| || | | || || || ||||| Sbjct 18976070 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAAA 18976011 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || ||||| || |||||||| |||||| Sbjct 18976010 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 18975951 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||||||||||||||| ||||||| | || || | | |||||| || || | Sbjct 18975950 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCCG 18975891 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| || | || || ||||| Sbjct 18975890 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACA 18975831 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| |||||||||| || || || || |||||||| || Sbjct 18975830 CCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAATACA 18975771 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || ||||| || || |||||| ||||| | ||| || || Sbjct 18975770 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTGA 18975711 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| || |||| | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 18975710 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 18975651 Score = 118 bits (130), Expect = 3e-22 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACA 21899 || || |||| | ||| ||||||||| ||| | || || ||||| || || ||| Sbjct 9553475 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACA 9553534 Query 21900 CCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAG 21959 || | ||||||||| ||||||||||| || || ||||| |||||||| || | ||| || Sbjct 9553535 CCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAG 9553594 Query 21960 TTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGA 22019 ||||| || || ||||| || || |||||| ||||||| ||| || || |||| || Sbjct 9553595 TTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGG 9553654 Query 22020 TAA 22022 ||| Sbjct 9553655 TAA 9553657 >seq12 Length=23561512 Score = 111 bits (122), Expect = 5e-20 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 |||||||| ||||| | ||| ||||||| | |||||||||||||||| ||| ||||| Sbjct 9700598 GGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGAGTAAAAGTGC 9700539 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | |||||| ||| || | |||| | || || || || || ||||| || || | Sbjct 9700538 AATCCGATCGCAGTAGAAGTAGGAATAATGGTACCAGAGATAATATTGTTTCCGTAAAGT 9700479 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 | | |||| || | || || || ||||| || || | || || || | | ||| Sbjct 9700478 AAAAAACCAGAAACATGCTCACGAATACCATCAATATCTGCTGGAGGGGCAGCGATGAAG 9700419 Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 ||||||||||| || || |||| ||| ||| | ||| |||| | || || ||||| Sbjct 9700418 GCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA-TCATCAAAACACCAAACCA 9700360 Query 22409 TCCTACATAAAGACGGTT 22426 ||| | ||||||||||| Sbjct 9700359 TCCAATGTAAAGACGGTT 9700342 Score = 87.8 bits (96), Expect = 5e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| | || || || || || || | | ||||| || Sbjct 9700933 GCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAGATTA 9700874 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||||| || | || |||||||| || || || || | || | | | | | |||| Sbjct 9700873 GCACGATTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 9700814 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 | ||| || ||||| || || | ||||||||||| ||| | || | |||| ||| Sbjct 9700813 TAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 9700754 Query 21651 CAAATACCTACAACAGGCCAGGC 21673 ||||| ||||| |||||||| || Sbjct 9700753 CAAATCCCTACTACAGGCCAAGC 9700731 >seq6 Length=27870862 Score = 93.3 bits (102), Expect = 1e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 21615 TTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCA 21674 ||||||||||| ||| | || | |||| |||||||| ||||| |||||||| ||| Sbjct 8615053 TTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGCCAAGCA 8615112 Query 21675 GCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGA 21734 || | ||||| || | | ||| || || ||||| ||||||||||||||||| | || Sbjct 8615113 GCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTAATCGG 8615172 Query 21735 CCAAAATAGCC 21745 || ||||| || Sbjct 8615173 CCCAAATAACC 8615183 >seq4 Length=30521686 Score = 86.0 bits (94), Expect = 2e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160 || ||||||||||| || ||||| ||| | || |||| | |||||| | || | Sbjct 7243219 CTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 7243160 Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220 || | | ||||| || ||||| | ||| ||||||| | |||||||||||||||||| Sbjct 7243159 AGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGG 7243100 Query 22221 TAGAAGTGTAGTCCGATGGC 22240 || ||||| | |||||| || Sbjct 7243099 TAAAAGTGCAATCCGATCGC 7243080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146201371112040