Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq8 470 2e-127 seq10 356 3e-93 seq12 143 3e-29 >seq8 Length=25958679 Score = 470 bits (520), Expect = 2e-127 Identities = 610/843 (72%), Gaps = 0/843 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 20128775 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 20128716 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 20128715 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 20128656 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| || || || ||||| || | |||||| | || ||| ||| Sbjct 20128655 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 20128596 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| | ||| || || | | | | ||||||||| | | | ||||||||| Sbjct 20128595 CAAATCCCTACTACAGGCCAAGCTACCAAGAAGAAGTGTAACGAACGAGAGTTGTTAAAA 20128536 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||||| ||||||||||||| ||||| || |||||||| || ||||||||||| ||| Sbjct 20128535 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 20128476 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| ||||||||||| | ||||| | || ||| || | |||||| || || ||| Sbjct 20128475 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 20128416 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || || || ||||| |||||||||||||| || || || ||||| | | Sbjct 20128415 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 20128356 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 20128355 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 20128296 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||| ||||| || |||||||| || |||| |||||| ||||||||||| || ||| Sbjct 20128295 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 20128236 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 |||| || || ||||| || || |||||| | || ||||| |||||| ||| Sbjct 20128235 CCAATAGGGTAATTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATGCAACA 20128176 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||| || | |||||| | ||| | | ||||||| | |||||| | | | Sbjct 20128175 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATGACAA 20128116 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | |||| | |||||| | | || | || ||| ||||| || || || |||||| Sbjct 20128115 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 20128056 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 ||||| | | |||||||||||||| || || ||||| ||||| || || |||| Sbjct 20128055 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 20127996 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 |||| | ||||||||||| || |||||||| || | || |||| | |||| | ||| Sbjct 20127995 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCA 20127936 Query 8731 CGA 8733 ||| Sbjct 20127935 CGA 20127933 >seq10 Length=20731201 Score = 356 bits (394), Expect = 3e-93 Identities = 440/601 (73%), Gaps = 12/601 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 18976240 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 18976181 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAAC-ATCAACAACTGA 8009 || | ||| | | ||| |||| ||| ||| ||| | |||||| || | Sbjct 18976180 GCACGGTTGATGATATCAGCCCAAGTA---------TTA--ATTGGCTATCAACTACATA 18976132 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 |||||| || || |||||||| || || || ||||| || | |||||| | || | | || Sbjct 18976131 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAATGAA 18976072 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAA 8129 ||||| | ||| || || | | ||| | ||||||||| | | || | ||||||||| Sbjct 18976071 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAA 18976012 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 ||||| ||||||||||||| ||||| || |||||||| || ||||||||||| || Sbjct 18976011 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 18975952 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 |||||| ||||||||||| | ||||| | || ||| || | |||||| || || | Sbjct 18975951 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCC 18975892 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| ||||||||||| || || || || ||||| | Sbjct 18975891 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATAC 18975832 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 ||| ||||| ||| ||| || || |||||||||| |||||||| ||||| |||||||| Sbjct 18975831 ACCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAATAC 18975772 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | ||| ||||| || |||||||| || |||| |||||| |||||| |||| || || Sbjct 18975771 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTG 18975712 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||||| || || | ||||| || || |||||| | || ||||| |||||| || Sbjct 18975711 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 18975652 Query 8490 A 8490 | Sbjct 18975651 A 18975651 Score = 179 bits (198), Expect = 5e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 ||| || | |||||| || || ||||| | | ||| || || || ||||| |||||||| Sbjct 9553441 AGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGC 9553500 Query 8286 ACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAG 8345 |||||| || || || ||||| | ||| ||||| ||| ||| || || ||||||||||| Sbjct 9553501 ACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAG 9553560 Query 8346 AATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGG 8405 |||||||||||||| |||||||| | ||| ||||| || |||||||| || |||| ||| Sbjct 9553561 GATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGG 9553620 Query 8406 CATTCCATCAGAGAATGAACCCTGACCAA 8434 ||| ||||||||||| || ||||||| Sbjct 9553621 CATACCATCAGAGAAACTTCCTTGACCAA 9553649 >seq12 Length=23561512 Score = 143 bits (158), Expect = 3e-29 Identities = 217/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8565 GAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGC 8624 |||||| | | || | || ||| ||||| || || || ||||||||||| | | || Sbjct 9700623 GAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGC 9700564 Query 8625 AGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACC 8684 |||||||||||| | || ||||| ||||| || || | |||| |||| | | ||| Sbjct 9700563 AGCTTCCCAAATTGAGTAAAAGTGCAATCCGATCGCAGTAGAAGTAGGAATAATGGTACC 9700504 Query 8685 AGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGAT 8744 |||||| || |||||||| || | || |||| | |||| | ||||||||||| || || Sbjct 9700503 AGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACGAATACCATCAAT 9700444 Query 8745 ATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCA 8804 ||| | || || ||||| || || || | ||||| || || || | || ||| Sbjct 9700443 ATCTGCTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGT 9700384 Query 8805 AGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||| ||||| | ||| |||||||| || | ||||| | ||| | || || || | ||| Sbjct 9700383 AGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTATCCA 9700324 Query 8865 CTCGCAAAA 8873 | ||| || Sbjct 9700323 GTTGCAGAA 9700315 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| | ||| | ||| || || ||| ||||||| | || Sbjct 9700933 GCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAGATTA 9700874 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | || | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 9700873 GCACGATTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 9700814 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 | ||| || || |||||||| || || || ||||| || | |||||| | || ||| ||| Sbjct 9700813 TAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 9700754 Query 8071 CAAACACATACAACTGG 8087 |||| | ||| || || Sbjct 9700753 CAAATCCCTACTACAGG 9700737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615833007966960