Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq8 437 3e-118 seq10 329 9e-86 seq12 111 5e-20 seq6 93.3 1e-14 seq4 86.0 2e-12 >seq8 Length=25958679 Score = 437 bits (484), Expect = 3e-118 Identities = 561/771 (73%), Gaps = 2/771 (0%) Strand=Plus/Plus Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || |||||| | ||||| |||||||||||||||||||| | ||||||| ||| | ||| Sbjct 20128006 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 20128065 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATG 41566 || |||||||| | | || | || | |||||| | |||| || | | | ||| Sbjct 20128066 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCATATG 20128125 Query 41567 GGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTAC 41626 || || ||||||||||| || | || || || ||| | || ||||| |||||| || Sbjct 20128126 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 20128185 Query 41627 TCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCT 41686 || |||||||| || ||||| |||||||| ||| | ||| || |||| || || | Sbjct 20128186 TCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAGGAAGT 20128245 Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 || ||||||| |||||| || || ||||| || || ||||||| ||| | || |||||| Sbjct 20128246 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 20128305 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGT 41806 || ||||| || || ||||||||||| ||||||||| | ||||| || || ||||| || Sbjct 20128306 GCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 20128365 Query 41807 GGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACG 41866 || | ||| ||||||||| ||| | |||| || || | || | || || Sbjct 20128366 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 20128425 Query 41867 ACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAAT 41926 |||||| | | || || | ||||||| ||||||||||||||||||||||| ||| Sbjct 20128426 ACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAAT 20128485 Query 41927 ATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAAT 41986 ||||| || ||||| || |||||||| || | ||||||||||||||||| ||||| || Sbjct 20128486 ATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAAC 20128545 Query 41987 TCCCGTAGTCTTCATTTCTTTCTTGCT-GCCTGGCCTGTTGTAGGTATTTGGTTTGCTGC 42045 || ||| | || ||| |||||| | || |||||||| ||||| |||||||| |||| Sbjct 20128546 TCTCGTTCGTTACACTTC-TTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGC 20128604 Query 42046 GCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCT 42105 | || | ||| ||||||||||| | || || ||||| || ||||||||| | | Sbjct 20128605 TTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGT 20128664 Query 42106 AGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGG 42165 | | | || | || || || || |||||||| || | |||||||| || ||||| Sbjct 20128665 TGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGG 20128724 Query 42166 CTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 20128725 TATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 20128775 >seq10 Length=20731201 Score = 329 bits (364), Expect = 9e-86 Identities = 433/600 (72%), Gaps = 10/600 (2%) Strand=Plus/Plus Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGG 41676 |||||| || || |||||||| || ||||| |||||||| ||| | |||| || |||| Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 41677 ACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCT 41736 || || ||| | ||||| |||||| || || ||||| || || ||||||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 41737 GGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 || |||||||| || || || || |||||||||| ||||||||| | ||||| || || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 41797 CGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCAT 41856 ||||| || || | || ||||||||| ||| | |||| || || | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 41857 TCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGA 41916 | || || |||||| | | || || | ||||||| ||||||||||||||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 41917 GACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAG 41976 |||||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 41977 CTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTG 42036 ||||| || || || | | || ||||| | ||||| |||||||| ||||| ||||| Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 42037 GTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCA 42096 ||| ||| | || | ||| ||||||||||| | || || ||||| || ||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 42097 ATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGC 42156 || | | | |||| | || || || || |||||||| || | |||||||| Sbjct 18976131 ATAT------GTAGTTGATAGCCA----ATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 42157 CAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || ||||| | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Score = 118 bits (130), Expect = 3e-22 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 41665 TTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTT 41724 ||| || |||| || || ||| ||||||| |||||| || || ||||| || || || Sbjct 9553657 TTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 9553598 Query 41725 CAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCT 41784 ||||| ||| | || |||||||| ||||| || || ||||||||||| ||||||||| | Sbjct 9553597 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 9553538 Query 41785 GGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCAC 41844 ||||| || || ||||| || || | ||| ||||||||| ||| | |||| || Sbjct 9553537 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 9553478 Query 41845 GTC 41847 || Sbjct 9553477 CTC 9553475 >seq12 Length=23561512 Score = 111 bits (122), Expect = 5e-20 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | |||| ||| | ||| ||| |||| || Sbjct 9700342 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 9700400 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| | | || || || | || || ||||| || || || Sbjct 9700401 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGCAGATATTGATGGTATTCGTGA 9700460 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 | || |||| | | | || || ||||| || || || || || | |||| | Sbjct 9700461 GCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTACCATTATTCCTAC 9700520 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 || ||| |||||| | ||||| ||| |||||||||||||||| | ||||||| || Sbjct 9700521 TTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGAAGCTGCATCTGTTGATGAGTG 9700580 Query 41500 GCTGTACAACGGCGGTCC 41517 | | ||||| |||||||| Sbjct 9700581 GTTATACAATGGCGGTCC 9700598 Score = 87.8 bits (96), Expect = 5e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42014 GCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAAC 42073 || |||||||| ||||| |||||||| |||| | || | ||| ||||||||||| Sbjct 9700731 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 9700790 Query 42074 TTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACC 42133 | || || ||||| || ||| ||||| | | | | | || | || || || || Sbjct 9700791 CTAAACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACT 9700850 Query 42134 TGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCA 42193 |||||||| || | || ||||| || ||||| | | || || || || || || | Sbjct 9700851 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACT 9700910 Query 42194 CACAACTTCCCGCTTGACCTTGC 42216 ||||||||||| || ||||| || Sbjct 9700911 CACAACTTCCCTCTAGACCTAGC 9700933 >seq6 Length=27870862 Score = 93.3 bits (102), Expect = 1e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 41942 GGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCAT 42001 || ||||| || || | ||||||||||||||||| ||||| || || ||| | | || Sbjct 8615183 GGTTATTTGGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 8615124 Query 42002 TTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACC 42061 ||||| | ||||| |||||||| ||||| |||||||| |||| | || | ||| Sbjct 8615123 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 8615064 Query 42062 ATGGCTTTCAA 42072 ||||||||||| Sbjct 8615063 ATGGCTTTCAA 8615053 >seq4 Length=30521686 Score = 86.0 bits (94), Expect = 2e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || |||||| | ||||| |||||||||||||||||||| | ||||||| ||| | ||| Sbjct 7243080 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 7243139 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATG 41566 || || ||||| | | || | || | |||||| | |||| || | ||| ||| Sbjct 7243140 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 7243199 Query 41567 GGACGAGAGTGGGAACTTAG 41586 || || ||||||||||| || Sbjct 7243200 GGTCGTGAGTGGGAACTGAG 7243219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207770821872