Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq8 450 4e-122 seq10 338 2e-88 seq12 161 3e-35 seq6 98.7 3e-16 seq2 87.8 5e-13 >seq8 Length=25958679 Score = 450 bits (498), Expect = 4e-122 Identities = 699/996 (70%), Gaps = 27/996 (3%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | ||||||||||| | || ||||| Sbjct 20127803 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 20127862 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| |||| || |||| || ||| | || || ||| |||||| |||| |||| Sbjct 20127863 GGTGTTTTGATAAT-CCCTACCTTATCGACCGCAACTTT-TGTATTTATTATCGCCTTCA 20127920 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||||||| |||||| | ||| ||||| | | | || | Sbjct 20127921 TCACTGCCCCTC-------------------TCGTGAGCATGTTTCTGGTTTTTTACTTT 20127961 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || |||||||||||| | | |||| | || || ||| | || | Sbjct 20127962 ACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACT 20128021 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| || ||| | ||||||||||| |||||| Sbjct 20128022 TTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 20128081 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCG--GTATCTTCTCTTACTTGGGACGCGAATGGGA 42635 |||| | || | |||||| | | | ||| ||| || || |||| || || ||||| Sbjct 20128082 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCATA--TGGGTCGTGAGTGGGA 20128139 Query 42636 ACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGC 42695 ||| | ||| || || ||| | || ||||| |||||| || || || ||||| || Sbjct 20128140 ACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGC 20128199 Query 42696 TGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAAT 42755 || || ||||| || ||| | || || |||| ||||| ||| || ||||| || Sbjct 20128200 GGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTAT 20128259 Query 42756 GCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACAT 42815 |||| | || || || ||||| |||||||| ||| | || |||||||| || |||||||| Sbjct 20128260 GCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACAT 20128319 Query 42816 TCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTC 42875 ||||||||||| || || ||| | ||||| || || ||||| || || || | ||| Sbjct 20128320 CCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAG 20128379 Query 42876 AGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAG 42935 |||||||||||| | || |||||| | | | | ||||| |||||||||||| Sbjct 20128380 TGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATC 20128439 Query 42936 CCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCA 42995 ||| | || |||| || ||||||||||| ||||||||||| ||||| || || || Sbjct 20128440 TGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCA 20128499 Query 42996 TGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCA 43055 |||||| ||||| || | |||||||||||||| ||||| || ||| || || || Sbjct 20128500 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCGTTACA 20128559 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 |||||| | | |||||||| || || ||||||||||||||| || | || | ||||| Sbjct 20128560 CTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 20128619 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCA 43175 |||||| || || | || || || || || |||||||| | ||||||| || || Sbjct 20128620 TATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCG 20128679 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 || || ||||||||||||||| | || ||||| || ||||| | || || ||||| Sbjct 20128680 CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCA 20128739 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 ||| || ||||| || |||||||| || || || || Sbjct 20128740 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 20128775 >seq10 Length=20731201 Score = 338 bits (374), Expect = 2e-88 Identities = 434/600 (72%), Gaps = 10/600 (2%) Strand=Plus/Plus Query 42672 TGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 |||||| || || || ||||| || || || ||||| || ||| | | || || |||| Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 42732 GCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTT 42791 ||||| ||| | ||||| |||||| | || || || ||||| |||||||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 42792 GGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGG 42851 || |||||||| || |||||||| |||||||||| || || ||| | ||||| || || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 42852 CGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGT 42911 ||||| || || || | || |||||||||||| | || |||||| | | | Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 42912 GCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGA 42971 | ||||| |||||||||||| ||| | || |||| || ||||||||||| || Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 42972 GACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTC 43031 ||||||||| ||||| || || |||||||| ||||| || | |||||||||||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 43032 GTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTG 43091 ||||| || ||| ||||| |||||||| | || |||||||| || || |||||||| Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 43092 GTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCA 43151 ||||| | || | || | ||||||||||| || || | || || || || || ||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 43152 ATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGC 43211 || | ||||||| || || ||||||||||||||| | || ||||| Sbjct 18976131 ATATGTAGTTGATAGCCA----------ATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 43212 CAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || ||||| | || || |||||||| || ||||| || |||||||| || || || || Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Score = 138 bits (152), Expect = 3e-28 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 42728 TTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCA 42787 |||| ||||| ||| || ||||| |||||| | || || || ||||| |||||||| | Sbjct 9553649 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 9553590 Query 42788 TGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTG 42847 || | || |||||||| || |||||||| ||||||||||| || || ||| | ||||| | Sbjct 9553589 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 9553530 Query 42848 CCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTC 42907 | || ||||| || || || | ||| |||||||||||| | || |||||| | Sbjct 9553529 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTT 9553470 Query 42908 TTGTGCGTGAAACGACTGAAAACGAA 42933 | | | ||||| |||||||||||| Sbjct 9553469 TGATCAGGGAAACCACTGAAAACGAA 9553444 >seq12 Length=23561512 Score = 161 bits (178), Expect = 3e-35 Identities = 231/320 (72%), Gaps = 4/320 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | ||||||||||| |||| |||||| Sbjct 9700306 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTT 9700365 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| |||| |||| Sbjct 9700366 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCA 9700423 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||||||||| | ||| |||||||| |||||||| | ||| ||||| | | | || | Sbjct 9700424 TCGCTGCCCCTCCAGCAGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTT 9700483 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || ||||||||| || | | |||| || || || ||| | || | Sbjct 9700484 ACGGAAACAATATTATCTCTGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACT 9700543 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || || || |||||||| | |||| || ||| | ||||||||||| |||||| Sbjct 9700544 TTTACTCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 9700603 Query 42578 AGCTCGTCGTGTTCCACTTC 42597 |||| | || | |||||| Sbjct 9700604 AGCTAATTGTTCTACACTTC 9700623 Score = 118 bits (130), Expect = 3e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43069 GCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAAC 43128 |||||||| || || ||||||||||||||| || | || | ||||||||||| || || Sbjct 9700731 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 9700790 Query 43129 TTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACT 43188 | || || || || || ||| |||| | ||||||| || || || || |||| Sbjct 9700791 CTAAACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACT 9700850 Query 43189 TGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCA 43248 ||||||||||| | |||||||| || ||||| | | || || ||||| || ||| | Sbjct 9700851 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACT 9700910 Query 43249 CATAACTTCCCGCTTGATCTTGC 43271 || |||||||| || || || || Sbjct 9700911 CACAACTTCCCTCTAGACCTAGC 9700933 >seq6 Length=27870862 Score = 98.7 bits (108), Expect = 3e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 42996 TGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCA 43055 |||||| || || || | |||||||||||||| ||||| || ||| ||||| || Sbjct 8615184 TGGTTATTTGGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 8615125 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 |||||| | || |||||||| || || ||||||||||||||| || | || | ||||| Sbjct 8615124 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 8615065 Query 43116 TATGGCGTTTAA 43127 |||||| || || Sbjct 8615064 TATGGCTTTCAA 8615053 >seq2 Length=33962743 Score = 87.8 bits (96), Expect = 5e-13 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 43086 GATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTT 43145 ||||||||||||| || | || | || |||||||| || || | ||||| || || || Sbjct 14982353 GATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTT 14982294 Query 43146 TAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAA 43205 ||||| || | ||||||| || || || || ||||||||||||||| | || Sbjct 14982293 CAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAA 14982235 Query 43206 TCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACA 43250 ||||| || |||| | || || |||||||| || ||||| || Sbjct 14982234 CCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14982190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143526292402264