Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq8 416 8e-112 seq10 298 2e-76 seq12 158 4e-34 >seq8 Length=25958679 Score = 416 bits (460), Expect = 8e-112 Identities = 604/846 (71%), Gaps = 8/846 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 20128775 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 20128716 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 20128715 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 20128657 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 20128656 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 20128597 Query 26056 CCATATGCCAACAACCGGCCAAG-TAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAA 26114 ||| || || || || ||||||| || |||||| ||| || | ||||| ||| |||| Sbjct 20128596 CCAAATCCCTACTACAGGCCAAGCTACCAAGAA-GAAGTGTAACGAACGAGAGTTGTTAA 20128538 Query 26115 AACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATG 26174 |||| ||||| || || ||||||| ||||| || || || || || ||||||||||| | Sbjct 20128537 AACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAG 20128478 Query 26175 TCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTG 26234 ||||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 20128477 TCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCC 20128418 Query 26235 CAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAA 26294 || | || || ||||| || ||||||||| ||| || | || ||||| | Sbjct 20128417 TGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATA 20128358 Query 26295 CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354 | ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| ||||||| Sbjct 20128357 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATA 20128298 Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414 | | ||||||||| ||||||||||| || || | |||||| |||||| ||||| |||| Sbjct 20128297 CAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTT 20128238 Query 26415 GTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAA 26474 | || | ||| ||| ||||| || || ||| || | | || |||| |||||||| Sbjct 20128237 GACCAATAGGGTAATTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATATGCAA 20128178 Query 26475 CAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATG 26534 || ||||| || | ||| || || | | || |||||||||| | || |||||| Sbjct 20128177 CAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACC--CATATG 20128120 Query 26535 --CTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAG 26592 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| Sbjct 20128119 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 20128060 Query 26593 CCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGA 26652 |||||| || | | |||||||||| || |||||||| || | |||||| || ||| Sbjct 20128059 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 20128000 Query 26653 GGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGG 26712 | || | | || || || || |||||||||||||| | ||| | || ||||| | Sbjct 20127999 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATG 20127940 Query 26713 CTCACG 26718 |||||| Sbjct 20127939 CTCACG 20127934 >seq10 Length=20731201 Score = 298 bits (330), Expect = 2e-76 Identities = 425/600 (71%), Gaps = 10/600 (2%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 18976240 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 18976181 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| ||| || ||| ||||| | Sbjct 18976180 GCACGGTTGATGATATCAGCCCAAGTATTAATTGGCT----------ATCAACTACATAT 18976131 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || || || ||||| || || ||||| || | ||||| | || | | | Sbjct 18976130 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAATGAAC 18976071 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || | ||| || ||| |||||| Sbjct 18976070 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAAA 18976011 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || ||||||| ||||| || || || || || ||||||||||| ||| Sbjct 18976010 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 18975951 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | || || ||||| | Sbjct 18975950 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCCG 18975891 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| || || | || ||||| || Sbjct 18975890 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACA 18975831 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||| | ||||| || || ||||| ||||| |||||||| Sbjct 18975830 CCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAATACA 18975771 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 18975770 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCCTTGA 18975711 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||| |||| ||||| || || ||| || | | || |||| |||||||||| Sbjct 18975710 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 18975651 Score = 132 bits (146), Expect = 1e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || ||||||||| ||| || | || ||||| || ||||| ||||| ||| || ||| Sbjct 9553490 CCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAAT 9553549 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 || ||||| || || ||||| ||||| |||||||| | ||||||||| ||||||||||| Sbjct 9553550 GGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAT 9553609 Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAA 26428 || || | |||||| |||||| ||||| ||||| || | ||| ||| Sbjct 9553610 ATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAA 9553657 >seq12 Length=23561512 Score = 158 bits (174), Expect = 4e-34 Identities = 219/304 (72%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 26548 TAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGT 26607 ||||||||| | | ||| || | ||| || ||||||||||||| |||||| || | | Sbjct 9700626 TAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGA 9700567 Query 26608 GCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGC 26667 |||||||||| || | |||||| || | |||||| || |||| | || | | | Sbjct 9700566 TGCAGCTTCCCAAATTGAGTAAAAGTGCAATCCGATCGCAGTAGAAGTAGGAATAATGGT 9700507 Query 26668 TCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATC 26727 || || || |||||||||||||| | ||| | || ||||| ||||||| || ||||| Sbjct 9700506 ACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACGAATACCATC 9700447 Query 26728 TATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTA 26786 |||||| | || || || ||||||||||| | ||||| ||| | ||| || | | || Sbjct 9700446 AATATCTGCTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATA 9700388 Query 26787 AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAA 26846 || || ||||| | || || |||||||| | || |||||||| || || || || | Sbjct 9700387 AGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTA 9700328 Query 26847 CCCA 26850 ||| Sbjct 9700327 TCCA 9700324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147705302922560