Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq8 511 6e-140 seq10 372 4e-98 seq12 172 6e-38 seq2 89.7 6e-13 >seq8 Length=25958679 Score = 511 bits (566), Expect = 6e-140 Identities = 710/990 (72%), Gaps = 27/990 (3%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 20127813 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 20127872 Query 155030 TGATCCCTTGCCTCCTCG-CTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCT 155088 | |||||| ||| ||| | || || || ||| |||||||||| |||| ||| Sbjct 20127873 TAATCCCTA-CCTTATCGACCGCAACTTTTGTATTTATTATCGCCTTCATCACTGCCCCT 20127931 Query 155089 CCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAAC 155148 | |||||| | || |||||| |||| | || || ||||| Sbjct 20127932 C-------------------TCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAAT 20127972 Query 155149 ATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATT 155208 || ||||||||||| || | |||| ||| || || || | ||||| || || ||| Sbjct 20127973 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 20128032 Query 155209 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTC 155268 |||||||| ||| || ||||||||||||| |||||||| ||||||| | || | || Sbjct 20128033 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 20128092 Query 155269 TTCCACTTCCTTATCGGAATCACAG--CATACTGTGGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | | |||| || |||||| |||||||||| || || Sbjct 20128093 CTACACTTCTTACTTGGTGTAGCTTGTCATA-TG-GGTCGTGAGTGGGAACTGAGTTTCC 20128150 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | ||||| | Sbjct 20128151 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTG 20128210 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | ||| ||| | |||||||| ||||||||||| |||||| | || | Sbjct 20128211 CTGTTTTCTTGAATTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 20128270 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | ||||||||||| |||| |||| | || ||||| ||||| || || ||||||||||| | Sbjct 20128271 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 20128330 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| | Sbjct 20128331 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 20128390 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| ||||| | || ||| || | | Sbjct 20128391 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 20128450 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| || || ||||| ||||| |||||||| ||||| || |||||||| || || | Sbjct 20128451 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 20128510 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | |||||||| ||||| || |||||||| | | ||||||||| | | Sbjct 20128511 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCGTTACACTTCTTCTTGG 20128570 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 || |||||||| || | || ||| |||||| | ||| | || ||||| |||| Sbjct 20128571 TAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 20128630 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865 | || ||||| ||||| |||||||| |||||||| || || | ||| || || | Sbjct 20128631 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAAT 20128689 Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || ||||| || || | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 20128690 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 20128749 Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||||||||||||||| ||||| |||||| Sbjct 20128750 GCTCACAACTTCCCTCTAGACCTAGCTGCT 20128779 >seq10 Length=20731201 Score = 372 bits (412), Expect = 4e-98 Identities = 445/604 (74%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 155352 TGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGG 155411 ||||||||| || || || || | ||||| ||||| ||| | |||| ||| | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 155412 TCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTT 155471 |||||| ||||| ||||| |||||| | || || ||||||||||| |||| |||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 155472 CGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGG 155531 || ||||| ||||| || || ||||||||||| | || |||||| | || ||||| || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 155532 TGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAAT 155591 ||| ||||| || || || || ||||||||| ||||| ||||| || ||| | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 155592 CCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGA 155651 | | ||||| ||||| | || ||| || | ||||||| || || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 155652 AACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATC 155711 |||||||| ||||| || |||||||| || || || || | |||||||| ||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 155712 CTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTG 155771 || |||||||| || | | ||||||||| | ||||| |||||||| || | || || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 155772 GGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 155831 | | |||| | ||| | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 155832 GTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGC 155891 | |||||| || | | || | | ||| ||||| || || | ||||| || Sbjct 18976131 ATATGTAGTTGA------TAGCCAATTAA----TACTTGGGCTGATATCATCAACCGTGC 18976180 Query 155892 TGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGC 155951 | |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Query 155952 TGCT 155955 |||| Sbjct 18976241 TGCT 18976244 Score = 163 bits (180), Expect = 3e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 155400 TTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTT 155459 ||| ||| | |||||||| ||||||||||| |||||| | || || ||||||||||| Sbjct 9553657 TTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 9553598 Query 155460 TAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCT 155519 |||| |||| | || ||||| ||||| || || ||||||||||| || || |||||| | Sbjct 9553597 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 9553538 Query 155520 TGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGAC 155579 || ||||| ||||| ||||| || || || ||| ||||||||| ||||| ||||| || Sbjct 9553537 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 9553478 Query 155580 ATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACA 155632 ||| | ||| | ||||| ||||| | || ||| || | ||||||| Sbjct 9553477 CTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACA 9553425 >seq12 Length=23561512 Score = 172 bits (190), Expect = 6e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || | || ||||| |||||| | | Sbjct 9700316 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 9700375 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 9700376 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 9700435 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | | ||| ||||||||||||||||| | || |||||| |||| | || || ||||| | Sbjct 9700436 CAGCAGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATA 9700495 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||| | || | |||| ||| | || || || | ||||| || | |||| Sbjct 9700496 TTATCTCTGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTT 9700555 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254 ||||||| ||| || ||||||||||||| |||||||| ||||||| Sbjct 9700556 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTT 9700600 Score = 125 bits (138), Expect = 8e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 155749 GCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAAC 155808 || |||||||| || | || ||| |||||| | ||| | || ||||| ||||| Sbjct 9700731 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 9700790 Query 155809 CTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGAC-GCTAGTGGTAAAGTCATCCCTAC 155867 || ||||| ||||| |||||| | |||||||| || || | ||| || || ||| Sbjct 9700791 CTAAACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATAC 9700849 Query 155868 ATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGC 155927 ||||| || || | || || ||| ||||||||||| |||||| ||||| ||||| | Sbjct 9700850 TTGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATAC 9700909 Query 155928 TCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||||||||||||| ||||| |||||| Sbjct 9700910 TCACAACTTCCCTCTAGACCTAGCTGCT 9700937 >seq2 Length=33962743 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 14982343 ACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTCAACCA-TCT 14982285 Query 155836 GTAGTAGAC-GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGG 155894 ||||| || || | ||| || || ||| ||||| || || | ||||| || Sbjct 14982284 GTAGTTGATAGCCAA-GGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAA 14982226 Query 155895 TCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934 ||||| |||||||||||||||||| ||||| |||||| || Sbjct 14982225 TCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14982186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584807288740080