Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq8 428 1e-115 seq10 288 3e-73 seq12 183 9e-42 seq2 87.8 5e-13 >seq8 Length=25958679 Score = 428 bits (474), Expect = 1e-115 Identities = 697/995 (70%), Gaps = 35/995 (4%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 20128779 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 20128720 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 20128719 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 20128661 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || || || |||||||||||| ||||| | | | Sbjct 20128660 CAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAG 20128601 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGC-ACCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || |||| |||||||| |||||||| || ||| ||| Sbjct 20128600 TGAACCAAATCCCTACTACAGGCCAAGCTACCAAGAA-GAAGTGTAACGAACGAGAGTTG 20128542 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||| ||||| || || || || || ||| Sbjct 20128541 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTA 20128482 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || ||||| |||| ||||| Sbjct 20128481 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTT 20128422 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| || | | |||| || ||||| || ||||||||| || | | ||| Sbjct 20128421 TCCCTGATCAAACTAGAGG--TTACCAAGG-AACCATGCATAGCACTGAATAGGGAACCG 20128365 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||| ||||| || ||||| || ||||| Sbjct 20128364 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCC 20128305 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 20128304 TGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAA 20128245 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | || ||| ||||| ||||| ||| || | | ||||||| Sbjct 20128244 CTTCCTTGACCAATAGGGTAATTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAA 20128185 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| || | |||||| || | | | |||||||||| | ||| Sbjct 20128184 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACC- 20128126 Query 41184 GCGTATG--CTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGT 41241 | |||| ||||| || | ||| ||||| | ||||| || | ||| || ||||| | Sbjct 20128125 -CATATGACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCAT 20128067 Query 41242 TGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTG 41301 |||||| |||||| || | | | |||||||| |||||||| || || | |||||| | Sbjct 20128066 TGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCG 20128007 Query 41302 CGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGG 41361 | ||| | |||| | || ||||| ||||||||||| ||||| | ||| | || | Sbjct 20128006 CCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAG 20127947 Query 41362 AAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGA 41421 |||| ||||||| | || || | ||| |||||||| || | Sbjct 20127946 AAACATGCTCACG-------------------AGAGGGGCAGTGATGAAGGCGATAATAA 20127906 Query 41422 A-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTAT 41480 | ||| || || || ||| | || || || | ||||| ||||| || | ||| Sbjct 20127905 ATACA-AAAGTTGCGGTCGATAAGGTAGGGATTATCAAAACACCGAACCATCCGATGTAA 20127847 Query 41481 AGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || ||||| ||||||||||| | |||||| || || Sbjct 20127846 AGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 20127812 >seq10 Length=20731201 Score = 288 bits (318), Expect = 3e-73 Identities = 433/609 (71%), Gaps = 20/609 (3%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 18976244 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 18976185 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| ||| || || |||| Sbjct 18976184 ATTAGCACGGTTGATGATATCAGCCCAAGTA---------TTA--ATTGGCTATCAACTA 18976136 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | | ||||| || || || || || || || |||||||||||| ||||| | | Sbjct 18976135 CATATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAA 18976076 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| |||||||| | || ||| Sbjct 18976075 TGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGATCGAGAGTTG 18976017 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||| ||||| || || || || || ||| Sbjct 18976016 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTA 18975957 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || ||||| |||| ||||| Sbjct 18975956 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTT 18975897 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| || | | |||| || ||||| || ||||||||| ||| | | ||| Sbjct 18975896 TCCCCGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTAAATAGGGAACCG 18975840 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||| | ||||| || ||||| || ||||| Sbjct 18975839 CCGAATACACCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCC 18975780 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| ||| |||||||| || ||| ||||||||||||||||||||| ||||| Sbjct 18975779 TGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAA 18975720 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | || |||| ||||| ||||| ||| |||| | ||||||| Sbjct 18975719 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 18975660 Query 41124 TATGCCACA 41132 ||||| ||| Sbjct 18975659 TATGCAACA 18975651 Score = 122 bits (134), Expect = 3e-23 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 40869 GATTCAGTTTCCGTGGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATA 40925 ||||| |||| ||||| |||| || | | |||| || ||||| || |||||| Sbjct 9553442 GATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATA 9553498 Query 40926 GCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATG 40985 ||| || | | ||| || || || || || || || | ||| || ||||| ||||| Sbjct 9553499 GCACTGAATAGGGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATA 9553558 Query 40986 AGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAA 41045 || ||||| || ||||| ||||| |||| ||| |||||||| || ||| ||||||||| Sbjct 9553559 AGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAA 9553618 Query 41046 GGCATACCATCAGAGAAAGAACCCTGACC 41074 |||||||||||||||||| || ||||| Sbjct 9553619 GGCATACCATCAGAGAAACTTCCTTGACC 9553647 >seq12 Length=23561512 Score = 183 bits (202), Expect = 9e-42 Identities = 230/313 (73%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 41204 TAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGT 41263 ||| ||||| | ||||| || | ||| || ||||| ||||||| |||||| || | | Sbjct 9700626 TAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGA 9700567 Query 41264 GCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGC 41323 | |||||||| |||| ||| || || | |||||| || |||| | |||| | | Sbjct 9700566 TGCAGCTTCCCAAATTGAGTAAAAGTGCAATCCGATCGCAGTAGAAGTAGGAATAATGGT 9700507 Query 41324 TCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATC 41383 ||||| ||||||||||| ||||| | ||| | || ||||| ||||||| || ||||| Sbjct 9700506 ACCAGAGATAATATTGTTTCCGTAAAGTAAAAAACCAGAAACATGCTCACGAATACCATC 9700447 Query 41384 TATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTA 41442 |||||| | || || || ||||| |||||||| || || ||| | || || || | || Sbjct 9700446 AATATCTGCTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATA 9700388 Query 41443 ATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGA 41502 | | || ||||| | ||||||||||| || | ||| || ||||| ||||||||||| | Sbjct 9700387 AGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTAGTTA 9700328 Query 41503 CCCAGTTACAAAA 41515 |||||| || || Sbjct 9700327 TCCAGTTGCAGAA 9700315 Score = 100 bits (110), Expect = 8e-17 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| |||||||||| ||||| ||||| |||||| ||||||| || Sbjct 9700937 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAG 9700878 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | || | | ||||||||||||| ||| || ||| || || || |||| Sbjct 9700877 ATTAGCACGATTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 9700819 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACC 40699 | || | ||| || || || || || || || |||||||||||| ||||| Sbjct 9700818 CAGATTAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACC 9700767 >seq2 Length=33962743 Score = 87.8 bits (96), Expect = 5e-13 Identities = 107/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 40550 GTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATC 40609 || |||||| ||||| |||||||||||||||||| | ||| | | ||| | | ||| Sbjct 14982186 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14982245 Query 40610 AGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAAAAC 40668 |||||||||| ||| || ||| || || || ||||| || ||||| || || || | Sbjct 14982246 AGCCCAAGTATAAATAACGCGACC-TTGGCTATCAACTACAGA-TGGTTGAAATTGAACC 14982303 Query 40669 CATTGAGGTTAAAAGCCATAGT 40690 |||| || || ||||||||||| Sbjct 14982304 CATTTAGATTGAAAGCCATAGT 14982325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143695884712812