Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq8 499 3e-136 seq10 381 7e-101 seq12 132 5e-26 seq2 95.1 1e-14 >seq8 Length=25958679 Score = 499 bits (552), Expect = 3e-136 Identities = 608/824 (74%), Gaps = 10/824 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 20128779 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 20128720 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 20128719 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 20128663 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 20128662 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 20128603 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | || | | ||||||||| | | ||||| Sbjct 20128602 AGTGAACCAAATCCCTACTACAGGCCAAGCTACCAAGAAGAAGTGTAACGAACGAGAGTT 20128543 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 20128542 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 20128483 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 20128482 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 20128423 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 20128422 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 20128363 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| || Sbjct 20128362 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 20128303 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 20128302 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 20128243 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| || |||||| ||||| || || | || ||||| || || Sbjct 20128242 TCCTTGACCAATAGGGTAATTCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATA 20128183 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| ||||||||||||||||| |||||| || |||||||||| |||||| || Sbjct 20128182 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACC-CA 20128124 Query 68015 GTATG--CTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTA 68072 |||| | | || | | |||||| | || | || | |||| || ||||| Sbjct 20128123 -TATGACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 20128065 Query 68073 TACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCG 68132 || ||||||||||| | || ||| |||||||| || || || ||||| | ||||| || Sbjct 20128064 TATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCC 20128005 Query 68133 TTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTA 68176 ||| |||||| || |||||||| || || ||||| ||||| Sbjct 20128004 GCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTA 20127961 >seq10 Length=20731201 Score = 381 bits (422), Expect = 7e-101 Identities = 447/604 (74%), Gaps = 10/604 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 18976244 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 18976185 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGAC 67477 || | ||| | ||| || ||||||||| ||| | | | ||||| || Sbjct 18976184 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAAT----TGGCTA------TCAACTAC 18976135 Query 67478 GGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGT 67537 |||||||||| ||||| ||||| || ||||| |||||||| | ||| | ||| | Sbjct 18976134 ATATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAAT 18976075 Query 67538 GAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTT 67597 |||||| || | || ||||| | ||||| | ||||||||| | | || |||||||| Sbjct 18976074 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGATCGAGAGTTGTT 18976015 Query 67598 GAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTA 67657 ||| ||||| |||||||| || || || || || |||||||| || ||||| || || Sbjct 18976014 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 18975955 Query 67658 AGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTC 67717 ||||||||| ||||| || || ||||||| | || || || | ||||| ||||| Sbjct 18975954 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 18975895 Query 67718 TCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAA 67777 | ||| | | ||| || || | ||||| |||||||||||||| || ||||| ||||| Sbjct 18975894 CCCGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAA 18975835 Query 67778 TACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAA 67837 |||||| ||||| || | ||| || ||| | |||||||||||||| || ||||| ||||| Sbjct 18975834 TACACCAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTATGATCTGCCTGGAA 18975775 Query 67838 CACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACC 67897 || | ||| |||| ||||||||||| || || | |||||| | ||| ||||| || Sbjct 18975774 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAAAGAAACTTCC 18975715 Query 67898 TTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGC 67957 |||||| | ||| || | |||||| ||||| || || | || ||||| || ||||| Sbjct 18975714 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 18975655 Query 67958 TACA 67961 ||| Sbjct 18975654 AACA 18975651 Score = 174 bits (192), Expect = 2e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 ||||| ||||| ||||| | | ||| || || | ||||| ||||||||||| || || Sbjct 9553451 TCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGG 9553510 Query 67767 GAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 ||||| ||||||||||| ||||| || | ||| || ||||| |||||||||||||| ||| Sbjct 9553511 GAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGC 9553570 Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCA 67886 ||||| ||||| || | ||| |||| ||||||||||| || || | |||||| | ||| Sbjct 9553571 TCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCA 9553630 Query 67887 GAGAAAGAACCTTGACCGAAAGGATA 67912 |||||| |||||||| | ||| || Sbjct 9553631 GAGAAACTTCCTTGACCAATAGGGTA 9553656 >seq12 Length=23561512 Score = 132 bits (146), Expect = 5e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118 |||| || ||||| || ||||||||||| | || ||| |||||||| || | || |||| Sbjct 9700600 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGAGTAAAAGT 9700541 Query 68119 GAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA 68178 | | ||||| || | ||| |||||| || | |||||| || || ||||| ||||| | Sbjct 9700540 GCAATCCGATCGCAGTAGAAGTAGGAATAATGGTACCAGAGATAATATTGTTTCCGTAAA 9700481 Query 68179 TGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGA 68238 | |||| | |||| | || | |||||||| ||||| ||||||| || || |||| Sbjct 9700480 GTAAAAAACCAGAAACATGCTCACGAATACCATCAATATCTGCTGGAGGGGCAGCGATGA 9700421 Query 68239 ATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACC 68298 | || || || || || | ||| | | ||| ||| |||||||| ||||| |||| Sbjct 9700420 AGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACC 9700361 Query 68299 AACCAA 68304 | |||| Sbjct 9700360 ATCCAA 9700355 Score = 122 bits (134), Expect = 1e-22 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| |||||||||||||||| ||||| ||||| || ||| |||| ||||| Sbjct 9700937 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGTATTACGTTCGTGTATTACTCCCATACCAAG 9700878 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT--GC-GTCAAC 67474 || | || | ||| || ||||||||| ||| || | |||| || ||||| Sbjct 9700877 ATTAGCACGATTGATGATATCAGCCCAAGTATTAATAAC---GCGACCTTGGCTATCAAC 9700821 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || |||| |||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 9700820 TACAGATTAGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 9700761 Query 67535 AGTGAACCAGATGCAGACCACAGG 67558 ||||||||| || | || ||||| Sbjct 9700760 AGTGAACCAAATCCCTACTACAGG 9700737 >seq2 Length=33962743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 67379 GTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTC 67438 || |||||| ||||| |||||||| |||||||| |||| ||| | ||| | ||| || Sbjct 14982186 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 14982245 Query 67439 TGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAA 67495 ||||||||| ||| || | |||| | ||||| || ||| ||||||| ||||| Sbjct 14982246 AGCCCAAGTATAAATAACG---CGACCTTGGCTATCAACTACAGAT-GGTTGAAATTGAA 14982301 Query 67496 ACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546 || || || ||||| |||||||| | ||| | ||||||||||| || Sbjct 14982302 CCCATTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 14982352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566920142444880