Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 4e-11 >seq5 Length=26652778 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 171878 CTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG-TTTACCAGCAA 171936 |||||| ||| || ||||||| | | ||| |||| || | ||| ||| || |||| Sbjct 7981067 CTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAA 7981126 Query 171937 AAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACAT 171996 | || | | ||| ||||||||||| ||||| || || || || || || || |||| Sbjct 7981127 AGATGAGGCGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACAT 7981186 Query 171997 TAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 172056 | || || || || || || || ||||| || ||||| || ||||| | ||| || | Sbjct 7981187 TGTCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCA 7981246 Query 172057 TGAATATCTGCAT 172069 || |||||||| Sbjct 7981247 CAAAGATCTGCAT 7981259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905092802384400