Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 132 1e-25 seq6 111 5e-19 seq8 96.9 1e-14 seq4 93.3 1e-13 seq1 93.3 1e-13 seq3 91.5 4e-13 >seq5 Length=26652778 Score = 132 bits (146), Expect = 1e-25 Identities = 213/306 (70%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2635457 ATTTCTAACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2635516 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| || || || ||||| |||||||| ||||| | | |||||| Sbjct 2635517 CTGGATATATCCAGTTTCCGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2635576 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2635577 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAA 2635636 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || || ||| || || ||||| |||| || | || | Sbjct 2635637 CCCACGACTTTCAGGACCATAGTCATTTTTCGTGAAGTGGGGCAATGTTCGATTGGTGAA 2635696 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||||| || Sbjct 2635697 GCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATCTGTGA 2635756 Query 302838 AATATT 302843 |||||| Sbjct 2635757 AATATT 2635762 >seq6 Length=27870862 Score = 111 bits (122), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 156038 CATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATT 156094 ||||| || ||||| || |||||||| ||| ||||| ||||| || ||||| | ||| Sbjct 3151183 CATAG--AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT 3151240 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 ||| |||| ||||||||||| ||| |||||||| || ||||| ||||| || |||| Sbjct 3151241 GAAAACACGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCT 3151300 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 |||| | |||| ||| |||| || ||||| || || | |||| || Sbjct 3151301 CCCAGTAGCTCGAATATTGTGAACTGATACACCAATTCCTCCAGCAGATTTGCTTATGAC 3151360 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| |||||||| | ||||| | || || ||||| ||||||| ||| Sbjct 3151361 AGCACATTCCTTCAAAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3151411 Score = 96.9 bits (106), Expect = 1e-14 Identities = 316/473 (67%), Gaps = 20/473 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| || ||||| || || || |||| ||||| ||||| ||| | | ||| || Sbjct 24747150 ATATCAGCCCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 24747205 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | || || ||||||||||||||| ||| | | Sbjct 24747206 ATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--A 24747263 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || ||| ||| | ||||||||||||||||| |||| || | | || Sbjct 24747264 AT-ACCTG--TCCCTC-TTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCA 24747319 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||| | | || | || | || | || ||||| || |||| || || Sbjct 24747320 AGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGAC 24747379 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | |||| || ||||| ||||| | |||| | || | || | ||| ||||| |||| Sbjct 24747380 AAACATCTCCACAAACTCAGATCCTGATA-TCGAGAAAAACGGCACACCAGCTTCCCCTG 24747438 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | ||| | || || | |||||||| |||||||| || || | | ||||| |||| Sbjct 24747439 CAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACCCT 24747498 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | | | || || |||| || || || || | || Sbjct 24747499 TAGGGATGCGAGCACCAACAGCGGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCACTT 24747558 Query 289304 CC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 || | ||| || | ||||| ||||| ||| || || |||||| |||| |||| Sbjct 24747559 CCATGAAG-TCTTGCTTTGCTTCATCGACA-CCAGCAACATCATCAAATGTAA 24747609 >seq8 Length=25958679 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2914678 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2914737 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 2914738 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2914797 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2914798 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2914857 Query 302718 ACCACG 302723 ||||| Sbjct 2914858 CCCACG 2914863 >seq4 Length=30521686 Score = 93.3 bits (102), Expect = 1e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATT 289086 ||| |||||||||| ||| ||||||||||| | | | || | | || | | || || Sbjct 19339225 ACCCACAGCATCAAGTTCATCAATGAAAATTATAGATGGGGCAGCTTCTTTGGCCTCCTT 19339284 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | ||||| || |||||||||| |||||| ||||| | | ||| ||||||||| | Sbjct 19339285 G--AATAAATCCCTTACACGGGCTGCTCCTCTTCCAACGAAAACTTCAACAAATTCACTA 19339342 Query 289147 GCGGATACTTGAATGAATGTTACATT--TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || || || || | | ||| || || ||||| |||||||| |||||||| | Sbjct 19339343 GCAGAAAC-AGAGAAAAAGGGA-ATTCCAGCCTCTCCTGCAACTGCCCTTGCCAGAAGAG 19339400 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || || ||||| || || || | | ||||| ||| | |||| ||| || || Sbjct 19339401 TTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCC 19339455 >seq1 Length=39866532 Score = 93.3 bits (102), Expect = 1e-13 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||||||||| |||||||| | | || || ||| || | || | |||||| Sbjct 33298395 GCATCAATTTCATCAATGAATACAATACTAGGTGAACACTGCCGAGCTTCTTGAAATAAG 33298454 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 | | || | ||||| ||||| ||||||| ||||||| | || || ||| | || | | Sbjct 33298455 TTCCGCACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAGTCTGAACCAGA-AAT 33298513 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || | ||| | ||| | || ||||| || | || || || ||||| ||||| Sbjct 33298514 AGACAAGAAGGGCACACCAGACTCTCCTGCAGTAGCTTTAGCAAGGAGAGTCTTTCCTGT 33298573 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATAT 289272 || || || || | | ||| | |||||||||| |||||| ||||| ||| |||| Sbjct 33298574 GCCTGGAGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAG--TTCTTCATAT 33298631 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 |||| || | || | || | |||| |||| || ||| | ||| || |||||||| Sbjct 33298632 TTCTTGGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCTTCATCACAG 33298691 Query 289333 CCTGCTACATC 289343 || |||||||| Sbjct 33298692 CCAGCTACATC 33298702 >seq3 Length=34446443 Score = 91.5 bits (100), Expect = 4e-13 Identities = 206/303 (68%), Gaps = 14/303 (5%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| ||||| || | || |||||||| ||||| |||||| |||| ||| | Sbjct 23629479 GCAATAAGCCCACATTTCTCGCATACATGGACTCTGTACGCATCACTCTGGTCAAATAAC 23629420 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCG---TGTGAAATCATACAATCACGCTCCATTTCA 251520 | |||| ||| | ||||| || || | ||||||||| || | |||||| || Sbjct 23629419 CTTTCCTTAAGGAA---AAATGCAGCGCCATGAGCAATCATACAGTCCCTCTCCATCTCT 23629363 Query 251521 CCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACC 251580 || || || |||||||||||||| | | ||||| ||||| || | || || | | Sbjct 23629362 CCAAACCGGAGACCACCATCGCGTGAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGC 23629303 Query 251581 ATAGGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637 | |||||| | | || ||| || ||| |||| ||||| ||||| || | |||| Sbjct 23629302 ACAGGACC-ACG--GCCTCTAGAGTGAATCTTGTCATCCACCATGTGCTTAAGTCTCTGG 23629246 Query 251638 TAGAATGCGGGACCGATGAAGATGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTATA 251696 || | | ||||| | ||| || | | || |||| || |||||| || |||| || Sbjct 23629245 TAATAAGTAGGACCAAGGAAAATCATGGCAGTTAATTTTCT-TCCAGTGTGACCGTTGTA 23629187 Query 251697 CAT 251699 ||| Sbjct 23629186 CAT 23629184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471745601442666