Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq8 425 6e-114 seq10 307 1e-78 seq2 300 2e-76 seq12 140 4e-28 seq6 91.5 2e-13 >seq8 Length=25958679 Score = 425 bits (470), Expect = 6e-114 Identities = 596/834 (71%), Gaps = 2/834 (0%) Strand=Plus/Plus Query 72385 GTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCA 72444 ||| | |||| ||| | || || ||||| || ||||||||||| | |||| |||| Sbjct 20127943 GTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCT 20128002 Query 72445 AACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTG 72504 || || ||||| ||||| || || || |||||||| || || | || |||||||| Sbjct 20128003 GCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTA 20128062 Query 72505 TATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTAC 72564 || || || |||||||| || || || || | |||||| | |||| | || | Sbjct 20128063 TACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCAT 20128122 Query 72565 ATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCA 72624 |||||| | |||||||||| | | | || || ||| | |||||||| ||| ||| Sbjct 20128123 ATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCA 20128182 Query 72625 TACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGT 72684 || ||||| ||||| | || || ||| || ||| | || || | ||||| || Sbjct 20128183 TATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAGGA 20128242 Query 72685 TCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTC 72744 ||||||||||||||||| |||| || || ||||| |||||||| ||| | || ||| Sbjct 20128243 AGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTC 20128302 Query 72745 CAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTC 72804 || ||||| || ||||| || ||||| || || || ||| ||||||||| ||| | ||| Sbjct 20128303 CAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTC 20128362 Query 72805 GGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAG 72864 || ||| || |||||||| ||||| ||||| | || || || | | ||||| || Sbjct 20128363 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAA 20128422 Query 72865 ACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATAT 72924 || || || ||||| | || | || || | || || ||||| ||||| || ||| Sbjct 20128423 ACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTAT 20128482 Query 72925 AACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAAC 72984 || ||||| || |||||||| || || || ||||||||||||| ||||| || ||| Sbjct 20128483 AATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAAC 20128542 Query 72985 AACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACC 73044 ||||||||||| |||||||||||| | | | | |||||||| | | ||||| || Sbjct 20128543 AACTCTCGTTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACT 20128602 Query 73045 TCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTT 73104 | | ||||| |||| ||||| ||||| || ||||||||||| ||||||||||| || Sbjct 20128603 GCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTA 20128662 Query 73105 GTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCT 73163 || ||| || || || || | || |||| ||| | | ||| | || || || Sbjct 20128663 GTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCT 20128721 Query 73164 TGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217 ||| |||||||| ||||| ||| | ||||| ||||||||||| ||||||||||| Sbjct 20128722 TGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 20128775 >seq10 Length=20731201 Score = 307 bits (340), Expect = 1e-78 Identities = 428/600 (71%), Gaps = 10/600 (2%) Strand=Plus/Plus Query 72618 TGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGG 72677 ||| ||||| ||||| ||||| | || || ||| || ||| | | || || | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 72678 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTT 72737 ||| || |||| |||||||||||| |||| || || ||||| |||||||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 72738 CGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGG 72797 || ||||| ||||| || ||||| || ||||| | || || ||| ||||||||| || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 72798 TATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAAT 72857 | | ||||| ||| || || ||||| ||||| ||||| | || || || | | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 72858 CAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGA 72917 | | || || || || ||||| | || | || || | || || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 72918 AACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATC 72977 || ||||| ||||| || |||||||| || || || ||||||||||||| ||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 72978 ATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATG 73037 || ||||||||||| || |||||||||||| | |||| | |||||||| | | || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 73038 GTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCA 73097 ||| | | | ||||| |||| ||||| ||||| || ||||||||||| |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 73098 ATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGC 73157 || ||||| || | | | || || |||| ||| | | ||| | || Sbjct 18976131 AT---ATGTAGTTGATAGCCAATTAAT-------ACTTGGGCTGATATCATCAACCGTGC 18976180 Query 73158 AAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217 || ||||| |||||||| ||||| ||| | ||||| ||||||||||| ||||||||||| Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 ||||||||||||||||| |||| || || ||||| |||||||| ||| | || ||||| Sbjct 9553635 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 9553576 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 ||||| || ||||| || ||||| || || || ||| ||||||||| ||| | ||||| Sbjct 9553575 GCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 9553516 Query 72808 GGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACA 72867 ||| || |||||||| ||||| ||||| | || || || | | ||||| || || Sbjct 9553515 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 9553456 Query 72868 ACAGAGAACGA 72878 || || ||||| Sbjct 9553455 ACTGAAAACGA 9553445 >seq2 Length=33962743 Score = 300 bits (332), Expect = 2e-76 Identities = 689/1038 (66%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || ||||| || || | ||||||||||| Sbjct 13366837 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 13366778 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 13366777 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 13366718 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 13366717 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 13366658 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || | |||||| || | |||| || | | | || | | ||| | || ||||| Sbjct 13366657 ACCGTAGCAGTTTCCCCCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 13366598 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||| ||| || || |||| |||||||||||| ||||||| ||||| Sbjct 13366597 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTTTTGTT 13366538 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| || Sbjct 13366537 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGA 13366478 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | | ||||| || ||| | | || || | || || || || Sbjct 13366477 TCTGTTCAATTGTGGCCTTATAATGCAATTTCATTCTCTGGCCCAATTGCTGTTTTTGTT 13366418 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | | || | || ||||| | || || |||||||||| || || || || Sbjct 13366417 TCCGTATTCCCGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 13366358 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 13366357 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 13366298 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 13366297 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 13366238 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 || ||||| || | ||||| | | ||| | || ||| |||| Sbjct 13366237 GGGGCAACCGTGGAAAACACTCTATTTGAGG------------ACGGTGATGGTA----- 13366195 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 ||| | | ||||| | | || | || || || | ||||| |||||| ||| | Sbjct 13366194 CAA---ATACCTTTC-GCACTTTTAACCCAACTCAAGCTGAAGACACTTATTCAATGGTC 13366139 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || ||||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 13366138 ACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 13366079 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 13366078 CATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTC 13366019 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || || || || ||||| || || ||||| || || || || || | ||||| ||| Sbjct 13366018 GGCCTGGCTCTGAACCTACTTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 13365959 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || |||||| | || | ||||| | || Sbjct 13365958 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACAAGGGTATTCGTGCG 13365899 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| || || ||||| || ||||| || || | ||||| || || || ||| Sbjct 13365898 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCAACCA 13365839 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 13365838 CGTGGAAACGCTCTTTAA 13365821 >seq12 Length=23561512 Score = 140 bits (154), Expect = 4e-28 Identities = 213/301 (71%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || || || | ||| |||| ||||||||||| || |||||||| Sbjct 9700324 TGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC- 9700382 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| ||||||| || Sbjct 9700383 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGCAGA 9700442 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || | ||| | |||| ||| | || || ||||| || ||||| Sbjct 9700443 TATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTC 9700502 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||| | | |||| |||| | || || ||||| ||||| || | || |||||||| Sbjct 9700503 TGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGAAGC 9700562 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || |||||||| || || || || | ||||| Sbjct 9700563 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 9700622 Query 72543 C 72543 | Sbjct 9700623 C 9700623 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080 |||||||| | | ||||| || | | ||||| |||| ||||| ||||| || ||| Sbjct 9700737 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 9700796 Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 73139 |||||||| |||||| |||| || || ||| || || || || | || |||| Sbjct 9700797 GGATTCAATTTCAACTAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGC 9700855 Query 73140 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAA 73199 ||| | | || | || || ||||| |||| ||| || || ||| | ||| | ||||| Sbjct 9700856 TGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACTCACAA 9700915 Query 73200 CTTCCCACTAGACCTAGC 73217 |||||| ||||||||||| Sbjct 9700916 CTTCCCTCTAGACCTAGC 9700933 >seq6 Length=27870862 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 72942 TGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACA 73001 ||| || || || ||||||||||||| ||||| || |||||||||||||| ||||| Sbjct 8615184 TGGTTATTTGGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 8615125 Query 73002 CTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTAC 73061 ||||||| | |||| | |||||||| | | ||||| || | | ||||| |||| Sbjct 8615124 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 8615065 Query 73062 AATGGCATTCAACCTTAA 73079 ||||| ||||| || || Sbjct 8615064 TATGGCTTTCAATCTAAA 8615047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572846259607440