Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq3 116 5e-21 >seq3 Length=34446443 Score = 116 bits (128), Expect = 5e-21 Identities = 165/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 194197 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 194255 ||||||| ||| | ||||| ||| || | |||||| |||||||| | || ||||| Sbjct 23628662 GATGGTTTAAGATTTGTTAAGGTTAGAATGCGATCAGTT-CGTATACCACAGATTGGGGA 23628720 Query 194256 TAAATTTTGTTCG-GGAATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 194314 ||| ||| || || |||| ||| ||||||||| || |||| |||| ||||||| | Sbjct 23628721 TAAGTTTAGTAGTAGGCATGG-TCAGAAAGGAACTGTGGGAATGACTTATACACAAGAGG 23628779 Query 194315 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTC 194374 | ||||||| || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 23628780 ACATGCCATGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 23628839 Query 194375 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 194421 | ||| | ||||| ||| |||| | |||| | ||||||||||| Sbjct 23628840 CATCCCGTATGACTATTGGTCAACTGATTGAGTGTATTATGGGTAAA 23628886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632459414433840