Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 seq2 91.5 1e-13 seq6 82.4 6e-11 >seq5 Length=26652778 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || || |||||||||||||||||| | || ||| | Sbjct 7980803 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 7980744 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | |||||| |||||| ||||| || || | ||| |||||| Sbjct 7980743 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCA 7980684 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | ||| || || ||||| ||||||| | | || | || |||||||| Sbjct 7980683 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 7980624 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || || || || || |||||| ||||| Sbjct 7980623 CATCCAGAAGGAGTCCACCTTGCACCTGGTG 7980593 >seq2 Length=33962743 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || ||| | |||||||| ||||| ||| |||| |||| || Sbjct 3067599 ATGCAAATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCT 3067540 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 3067539 GATACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3067480 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| ||| || | || || |||||| Sbjct 3067479 CAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 3067420 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| | ||| Sbjct 3067419 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 3067390 >seq6 Length=27870862 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || ||||| ||||||||| | || ||| | | Sbjct 25466389 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 25466448 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 25466449 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 25466508 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || | |||||||||||| Sbjct 25466509 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 25466568 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| ||||| Sbjct 25466569 ATCCAGAAGGAGTCCACACTCCACCTGGTG 25466598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412822389706274