Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5 120 2e-22 seq4 104 2e-17 seq6 100 2e-16 >seq5 Length=26652778 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| || | ||||| || || || ||||| ||||| || | |||||| Sbjct 7980587 ACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCC 7980646 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | |||| | ||||||||||| ||||| | ||| || Sbjct 7980647 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTT 7980706 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| || | || | ||||| || || || || || || | Sbjct 7980707 GTCCTG-AATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAA 7980765 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || || || || ||||| || |||||| Sbjct 7980766 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7980803 >seq4 Length=30521686 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||||| || || || ||||| ||||| |||| ||||||| | Sbjct 27324860 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCA 27324801 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 27324800 TCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTG 27324741 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || || || || Sbjct 27324740 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGACGACTCAACCTCCAGGGTGATG 27324681 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 27324680 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 27324646 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || | ||||| || || || |||||||| || |||| |||||| Sbjct 27324632 CGGAGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCG 27324573 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 27324572 TCCTCAAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGTGGAATACCCTCCTTG 27324513 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || | || || Sbjct 27324512 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATC 27324453 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 27324452 GTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 27324418 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || |||||||||||||| | || || ||| || || || |||||| Sbjct 27324158 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 27324099 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 || | || | | |||||| ||||| || || ||||| ||||| || ||| || | || Sbjct 27324098 GCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG-AATCTTAGCCTT 27324040 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || || || || || | || || || |||||||| | ||| Sbjct 27324039 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 27323980 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| ||||||||||| Sbjct 27323979 CTTAACGAATATCTGCAT 27323962 >seq6 Length=27870862 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 23628877 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 23628818 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || ||||| || || || | |||| |||||||| || || || Sbjct 23628817 TAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGG 23628758 Query 29679 AATACCCTCTTTGTCTTG 29696 ||||||||||||||| || Sbjct 23628757 AATACCCTCTTTGTCCTG 23628740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385201275028338