Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 223 3e-52 seq11 123 2e-22 seq12 100 2e-15 seq2 98.7 7e-15 >seq3 Length=34446443 Score = 223 bits (246), Expect = 3e-52 Identities = 746/1151 (65%), Gaps = 20/1151 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| |||||| || ||||| ||||| || | ||||| ||| || ||||||| Sbjct 32661024 CGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 32660965 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || || | ||||| ||||| || || | |||| | || || ||| || || Sbjct 32660964 CTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 32660905 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | | |||||||| | | || || || ||| || ||||| || | Sbjct 32660904 TGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGCTGGTTATCGGAGT 32660845 Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || | || || ||| || || |||||| || ||||| || || | Sbjct 32660844 AGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGCACT 32660786 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| || ||||| || | ||||||||| || ||||| ||||||| || | | Sbjct 32660785 GTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGGAGAAGA 32660726 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || || | | ||| ||| ||||| || || | |||||||| Sbjct 32660725 AGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTGGACGGCAGCACCG 32660666 Query 281783 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 ||||| |||||||||||||| |||| | || || |||| || || ||||| || | Sbjct 32660665 TATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCGTTGAAGAAGT 32660608 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||||| || ||| | || || | || ||| || ||||| | |||| |||| Sbjct 32660607 CCTGCAGAAGCTGCTGAACCCTGGGGATTCTAGTTGAACCACCAACAAGGACAACATCAT 32660548 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCA 281959 | || ||| | || |||| |||| |||| | || || || || || | || Sbjct 32660547 GGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATACAT 32660489 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 || || | ||| ||| || || || | ||||| || | |||| || || Sbjct 32660488 TTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATAGTGGAATAGAAA 32660429 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 |||| || || || | ||||||| |||||| |||||||| | | || || || | Sbjct 32660428 TCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGAGGAGAGGGTC 32660369 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 | || || | |||||||| ||| || || || | || || | | | || | | | Sbjct 32660368 CTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG--GGTTCCCACTGA 32660311 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | |||| ||||||||||| |||| ||| | | || || || || |||| Sbjct 32660310 TATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTCAA 32660251 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || || | | ||| | || | || ||| | || | |||| || || | Sbjct 32660250 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCAAAAATACCCTCCT 32660191 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | |||||| || |||||||| | |||||||| || || ||| Sbjct 32660190 CAATTGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTTCT 32660131 Query 282318 TTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | || | ||| || || ||||||||||| |||| |||||||| ||||| Sbjct 32660130 TCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGC 32660072 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| || || | || |||||||||||| ||||| || ||||||||||| || || Sbjct 32660071 TCATTGATGATACGCATAACATTAAGACCCGCAATAACACCGGCATCTTTAGTTGCCTGC 32660012 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 || || ||||| || || || ||||||||||| | ||| |||| | || | ||| Sbjct 32660011 CTCTGGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCATTCTTCACAGTTGATCCT 32659952 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | ||||| || | | ||| || | | || ||| |||||||||| ||| | | Sbjct 32659951 AGGTAAGCTTCAGCGATCTCACGCATCTTGATAAGAACCATGGATGAAATTTCTTCGGCA 32659892 Query 282551 GAATATTGCTT 282561 || ||||||| Sbjct 32659891 GAGAATTGCTT 32659881 >seq11 Length=27785585 Score = 123 bits (136), Expect = 2e-22 Identities = 225/328 (69%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 27541930 TTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 27541871 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | || || | || | || | || || |||| | | || Sbjct 27541870 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 27541811 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 282328 | ||||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 27541810 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 27541751 Query 282329 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || || ||||||||||| |||| ||| ||||||||||| || || || || | | Sbjct 27541750 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCGGCAGCAGTTGGCTCGTTGATGATGCGC 27541691 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 27541690 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 27541631 Query 282446 AAATATGCAGGAACAGTAATAACGGCAT 282473 || || ||||||||||| | |||||||| Sbjct 27541630 AAGTAGGCAGGAACAGTGACAACGGCAT 27541603 >seq12 Length=23561512 Score = 100 bits (110), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 6698647 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 6698594 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | |||||||| || ||||| ||||| | | ||| | Sbjct 6698593 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGCTCATTTATAATGCGGAGAACTTCC 6698534 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 6698533 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 6698474 Query 282455 GGAACAGTAA 282464 |||||||||| Sbjct 6698473 GGAACAGTAA 6698464 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||| || |||| | | ||||| |||||| ||| |||||||| | || || || || Sbjct 19720918 TCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCAAGGTCGAAGATGAG 19720859 Query 282310 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 19720858 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGC 19720799 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||| || ||||| || || | || ||||| || |||||||| | || || || || Sbjct 19720798 AGTAGGCTCATTGATGATACGCATGACATTGAGGCCAGCAATGACCCTAGCGTCCTTGGT 19720739 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 || || || ||||| | ||| || || |||||||| || Sbjct 19720738 AGCCTGCCTCTGTGAGTAGTTGAAGTAAGCAGGAACTGT 19720700 >seq2 Length=33962743 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 30787254 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 30787313 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 30787314 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 30787373 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || ||||| | || || ||| |||| |||| Sbjct 30787374 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 30787407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740442952334868