Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 3e-13 seq9 84.2 1e-11 seq2 84.2 1e-11 seq5 82.4 5e-11 >seq1 Length=39866532 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 11683510 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTC 11683569 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 11683570 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTG 11683629 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | ||| | |||||| || ||||| || | ||||||||| | Sbjct 11683630 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 11683688 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 11683689 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 11683719 >seq9 Length=20482102 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||| |||| |||||||| | || ||| Sbjct 12975578 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCCAGTGTGCGCCCATCTTCC 12975519 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | || || ||||| || ||||||||||| |||||| | || | ||||| ||||| Sbjct 12975518 AGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGGGATCCCTTCCTTGTC 12975463 >seq2 Length=33962743 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| || || ||| ||| || || |||||||| |||| Sbjct 3066916 ACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3066975 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| |||||| | || |||| || || || || || |||| ||||||||| ||| | || Sbjct 3066976 GAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGG 3067035 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| ||| ||| ||||||| || | Sbjct 3067036 AATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTATCAATGGTGTCGGAGCTCTCAA 3067094 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || || || || |||||||||||| Sbjct 3067095 CCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCATA 3067144 >seq5 Length=26652778 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | ||| || | | || |||| || Sbjct 21799973 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGC 21799914 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||||||||| | ||||||||||||| | || | || || ||||| || ||| Sbjct 21799913 TTGCCGGCAAAAATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTC 21799854 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| || | ||| | ||||| ||| || || |||| ||| || || || || || Sbjct 21799853 GCCTTC-ACGTTGTCGATCGTGTCTGATGACTCAACCTCAAGCGTAATGGTCTTGCCAGT 21799795 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 21799794 AAGGGTCTTCACGAAGATCTGCAT 21799771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688704786560