Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq8 518 1e-142 seq10 403 5e-108 seq12 145 2e-30 seq6 114 4e-21 seq2 107 6e-19 >seq8 Length=25958679 Score = 518 bits (574), Expect = 1e-142 Identities = 616/825 (75%), Gaps = 14/825 (2%) Strand=Plus/Plus Query 19670 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 19727 ||||| |||||||| || || || || ||| | |||| | | || || |||||| Sbjct 20127958 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGAT 20128015 Query 19728 TACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGAC 19787 | ||||| |||||||||||||||||| || ||||||| ||| | ||||| || || | Sbjct 20128016 TGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTC 20128075 Query 19788 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTT---ACATGGGACGAG 19844 | | | || | || | |||||| | |||| | || |||| | ||||| || | Sbjct 20128076 CTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTCATATGGGTCGTG 20128132 Query 19845 AGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTC 19904 |||||||||| || | || || || ||| | ||||||||| |||||| || || |||| Sbjct 20128133 AGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 20128192 Query 19905 CGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCT-ACCCGTTTGGTCAGGGTAGCTTCTCC 19963 | ||||| || || |||| || ||||| | | |||| ||||||| || || ||||| Sbjct 20128193 CTGTTGCGGCTGCTACTGCTGT-TTTCTTGAATTACCCTATTGGTCAAGGAAGTTTCTCT 20128251 Query 19964 GATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAA 20023 |||| ||||||||| || || || ||||| ||||||| ||| | |||||||| || || Sbjct 20128252 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 20128311 Query 20024 CATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCA 20083 |||||||| || ||||| || || |||||| | ||||| |||||||||||||| || || Sbjct 20128312 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 20128371 Query 20084 CTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGA 20142 ||||||||||| ||||| ||||| | || || || | | ||| | | || || ||||| Sbjct 20128372 CTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGA 20128430 Query 20143 ACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGT 20202 | | ||| | || | ||||||| ||||| ||||| |||||||| ||||| || || Sbjct 20128431 AAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGT 20128490 Query 20203 AGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCG 20262 |||||||||||||| ||||| || || ||||||||||| ||| ||| ||||| || Sbjct 20128491 GGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCG 20128550 Query 20263 TTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 20322 ||| ||||||||||| | | || ||||| || ||||||||||||||| |||| || || Sbjct 20128551 TTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGG 20128610 Query 20323 CGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAA 20382 || ||| ||||| || ||||| ||||| ||||| || ||||| || | | || | Sbjct 20128611 TATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG 20128670 Query 20383 CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGA 20442 | | ||||| || ||| ||||||||||||| || |||| ||||||||||| || | || Sbjct 20128671 CCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGA 20128730 Query 20443 GGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || ||||| ||||| |||||||| |||||||| || ||||| || Sbjct 20128731 AGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 20128775 >seq10 Length=20731201 Score = 403 bits (446), Expect = 5e-108 Identities = 457/609 (75%), Gaps = 14/609 (2%) Strand=Plus/Plus Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939 ||||| |||||| || || ||||| |||||||| || |||| || ||||| | | ||| Sbjct 18975644 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTAC 18975702 Query 19940 CCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAAC 19999 || ||||||| || || |||| |||| ||||||||| || || || ||||| |||||| Sbjct 18975703 CCTATTGGTCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAAC 18975762 Query 20000 TACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGT 20059 | ||| | |||||||| || || |||||||| || ||||| | || |||||| | ||| Sbjct 18975763 TTTATGATTGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGT 18975822 Query 20060 GTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCC 20119 || |||||||||||||| || || ||||| ||||| ||||| ||||| | || || || Sbjct 18975823 GTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTC- 18975881 Query 20120 TCGCTTGTGCGTG-AGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCA 20178 | | ||| || | | || |||||| | ||| | || | ||||||| ||||| || Sbjct 18975882 TAGTTTGATCGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCA 18975941 Query 20179 AGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCA 20238 ||| |||||||| ||||| || || |||||||||||||| ||||| || || |||||||| Sbjct 18975942 AGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCA 18976001 Query 20239 ATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGT 20298 ||| ||| ||| ||||| || ||| ||||||||||| | ||||| ||||| || || Sbjct 18976002 ATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 18976061 Query 20299 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAA 20358 ||||||||||||| ||| || || || ||| ||||| || ||||| ||||| ||||| Sbjct 18976062 AGGGATTTGGTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAA 18976121 Query 20359 CTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCT 20418 || ||||| | | | || | | | ||| ||||||||||||| || | Sbjct 18976122 TTTCAACCAATATGTAGTTGATAGCCA----------ATTAATACTTGGGCTGATATCAT 18976171 Query 20419 CAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACT 20478 ||| ||||||||||| || | || || ||||| ||||| |||||||| |||||||| || Sbjct 18976172 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 18976231 Query 20479 TGACCTTGC 20487 ||||| || Sbjct 18976232 AGACCTAGC 18976240 Score = 165 bits (182), Expect = 2e-36 Identities = 144/178 (81%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 19937 TACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTC 19996 ||||| ||||||| || || ||||| |||| ||||||||| || || || ||||| ||| Sbjct 9553656 TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 9553597 Query 19997 AACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTT 20056 |||| ||| | |||||||| || || |||||||| || ||||| || || |||||| | Sbjct 9553596 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 9553537 Query 20057 GGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTA 20114 ||||| |||||||||||||| || || ||||||||||| ||||| ||||| |||| || Sbjct 9553536 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTA 9553480 >seq12 Length=23561512 Score = 145 bits (160), Expect = 2e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || ||||||||||||||| |||| || || || ||| ||||| || ||| Sbjct 9700731 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 9700790 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || ||||| ||||| || ||| | || | | || | | | ||||| || ||| ||||| Sbjct 9700791 CTAAACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACT 9700850 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| || |||||||||||||||| || | | || || || ||||| ||| || Sbjct 9700851 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACT 9700910 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 || |||||||| || ||||| || Sbjct 9700911 CACAACTTCCCTCTAGACCTAGC 9700933 Score = 113 bits (124), Expect = 1e-20 Identities = 194/279 (70%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 9700321 AACTGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATC 9700380 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || |||| Sbjct 9700381 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGC 9700439 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || | || || ||| | ||||| |||||||| || || Sbjct 9700440 AGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTAT 9700499 Query 19690 ATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGA 19749 || || || | |||| | | ||| |||||| | ||||| ||| |||||||||| Sbjct 9700500 CTCTGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGA 9700559 Query 19750 AGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788 |||| || ||||||| ||| | ||||| || || || Sbjct 9700560 AGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCC 9700598 >seq6 Length=27870862 Score = 114 bits (126), Expect = 4e-21 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 20212 TGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACA 20271 |||||| || || || || ||||||||||| ||| ||| ||||| |||||| |||| Sbjct 8615184 TGGTTATTTGGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 8615125 Query 20272 CTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTAC 20331 ||||||| | ||||| ||||| || ||||||||||||||| |||| || || || ||| Sbjct 8615124 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 8615065 Query 20332 AATGGCGTTTAATCTGAA 20349 ||||| || ||||| || Sbjct 8615064 TATGGCTTTCAATCTAAA 8615047 >seq2 Length=33962743 Score = 107 bits (118), Expect = 6e-19 Identities = 127/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 20296 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 20355 ||||| |||||||||| |||| || || || || ||||| || ||||| || || || Sbjct 14982359 GGTAGAGATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTT 14982300 Query 20356 CAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACAT 20415 ||| || ||||| || | | || | | | ||||| || ||| ||||||||||||| || Sbjct 14982299 CAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATAT 14982241 Query 20416 TCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCA 20466 |||| ||||| ||||| | | || || ||||| ||||| |||||||| Sbjct 14982240 CATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14982190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148822052288244