Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq8 457 3e-124 seq10 367 4e-97 seq12 143 8e-30 seq6 113 1e-20 seq2 102 2e-17 >seq8 Length=25958679 Score = 457 bits (506), Expect = 3e-124 Identities = 566/772 (73%), Gaps = 2/772 (0%) Strand=Plus/Plus Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || |||||| | ||||| |||||||||||||||||| || ||||||| ||| | ||| Sbjct 20128006 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 20128065 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | |||||| | |||| || | | | ||| Sbjct 20128066 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCATATG 20128125 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || ||||||||||| || | || || || ||| | || |||||| ||| ||||| Sbjct 20128126 GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 20128185 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCT 29085 |||||||| || || || || |||| |||||| | ||||| | |||||||| | Sbjct 20128186 TCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAGGAAGT 20128245 Query 29086 TTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAA 29145 || || | |||||||| || || || || || ||||||| ||| | || ||||| Sbjct 20128246 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 20128305 Query 29146 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGT 29205 || || |||||||| || ||||| || || |||||| | || || ||||| || ||||| Sbjct 20128306 GCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 20128365 Query 29206 GGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGAC 29264 || || ||||| ||||| ||||| ||||| | || || || | | ||| | | || || Sbjct 20128366 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAAC 20128424 Query 29265 GACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAA 29324 |||||| || ||| || | ||||||| ||||| ||||| |||||||||||||| Sbjct 20128425 CACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAA 20128484 Query 29325 CATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAA 29384 || || |||||||| ||||| ||||| || || ||||||||||||||| ||| || || Sbjct 20128485 TATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAA 20128544 Query 29385 TAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGC 29444 ||||| ||||||||||| | | || ||||| || ||||||||||||||| |||| Sbjct 20128545 CTCTCGTTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGC 20128604 Query 29445 CTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCT 29504 || || || ||| ||||| || ||||| ||||| || || || ||||| || | | Sbjct 20128605 TTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGT 20128664 Query 29505 CGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGG 29564 || | | | ||||| || |||||||||||||||||| | |||| || ||||| || || Sbjct 20128665 TGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGG 20128724 Query 29565 CTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 | ||||||||||| || ||||||||||| |||||||| || || || ||| Sbjct 20128725 TATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 20128776 >seq10 Length=20731201 Score = 367 bits (406), Expect = 4e-97 Identities = 450/613 (73%), Gaps = 20/613 (3%) Strand=Plus/Plus Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| ||||| |||||||| || ||||| || |||| |||||| | | |||| Sbjct 18975644 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACC 18975703 Query 29069 CATTCGGTCAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTC 29124 | | |||||||| |||||| || | |||||||| || || || || || ||| Sbjct 18975704 CTATTGGTCAAGGAAGTTTCTTT----GATGGTATGCCTTTAGGAATATCTGGTACTTTC 18975759 Query 29125 AACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTG 29184 |||| ||| | || ||||| || || |||||||| || ||||| | || |||||| | Sbjct 18975760 AACTTTATGATTGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTA 18975819 Query 29185 GGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACG 29244 || || ||||| || ||||| || || ||||||||||| ||||| ||||| | || || Sbjct 18975820 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACC 18975879 Query 29245 TCCTCGCTTGTGCGTG-AGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGG 29303 || | | ||| || | | || |||||| || ||| || | ||||||| ||||| Sbjct 18975880 TC-TAGTTTGATCGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 18975938 Query 29304 ACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTT 29363 ||||| |||||||||||||| || || |||||||| ||||| ||||| || || ||||| Sbjct 18975939 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTT 18975998 Query 29364 CCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 29423 |||||||||| ||| || || || ||| ||||||||||| | ||||| ||||| || Sbjct 18975999 CCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGT 18976058 Query 29424 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 ||||||||||||||| ||| || || || ||| ||||| || ||||| ||||| || Sbjct 18976059 AGTAGGGATTTGGTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATT 18976118 Query 29484 TAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGT 29543 || || ||||| | | | || | | | |||||||||||||||||| | Sbjct 18976119 CAATTTCAACCAATATGTAGTTGATAGCCA----------ATTAATACTTGGGCTGATAT 18976168 Query 29544 TCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCC 29603 |||| || ||||| || || | ||||||||||| || ||||||||||| |||||||| Sbjct 18976169 CATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCC 18976228 Query 29604 ACTTGATCTGGCT 29616 || || || ||| Sbjct 18976229 TCTAGACCTAGCT 18976241 >seq12 Length=23561512 Score = 143 bits (158), Expect = 8e-30 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 29413 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 29472 || ||||| || ||||||||||||||| |||| || || || ||| ||||| || ||| Sbjct 9700731 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 9700790 Query 29473 CTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACT 29532 || ||||| || || || ||| | || | | || | | | ||||| || ||||||||| Sbjct 9700791 CTAAACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACT 9700850 Query 29533 TGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCT 29592 ||||||||| | ||||||| ||||| || || | | |||||| || || |||||| || Sbjct 9700851 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACT 9700910 Query 29593 CATAACTTCCCACTTGATCTGGCT 29616 || |||||||| || || || ||| Sbjct 9700911 CACAACTTCCCTCTAGACCTAGCT 9700934 Score = 109 bits (120), Expect = 2e-19 Identities = 193/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 9700321 AACTGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATC 9700380 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| || || || |||| Sbjct 9700381 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGC 9700439 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || | ||| |||| | | || || |||||||| || || Sbjct 9700440 AGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTAT 9700499 Query 28818 ATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGA 28877 || || || | | || | | ||| |||||| | ||||| ||| |||||||||| Sbjct 9700500 CTCTGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGA 9700559 Query 28878 AGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 28916 |||| || ||||||| ||| | ||||| || || || Sbjct 9700560 AGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCC 9700598 >seq6 Length=27870862 Score = 113 bits (124), Expect = 1e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 ||||| || || || || ||||||||||||||| ||| || || |||||| ||||| Sbjct 8615183 GGTTATTTGGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 8615124 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 |||||| | ||||| ||||| || ||||||||||||||| |||| || || || ||| Sbjct 8615123 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 8615064 Query 29461 ATGGCGTTTAATCTGAA 29477 ||||| || ||||| || Sbjct 8615063 ATGGCTTTCAATCTAAA 8615047 >seq2 Length=33962743 Score = 102 bits (112), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 29424 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 ||||| |||||||||| |||| || || || || ||||| || ||||| || || || Sbjct 14982359 GGTAGAGATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTT 14982300 Query 29484 TAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGT 29543 || || ||||| || | | || | | | ||||| || ||| |||||||||||||| | Sbjct 14982299 CAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATAT 14982241 Query 29544 TCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 |||| || || || || | | ||||||||||| || ||||||||||| Sbjct 14982240 CATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14982190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146658950365028