Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq8 497 3e-136 seq10 372 9e-99 seq12 147 6e-31 seq2 98.7 3e-16 >seq8 Length=25958679 Score = 497 bits (550), Expect = 3e-136 Identities = 701/978 (72%), Gaps = 35/978 (4%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || |||| || | Sbjct 20127819 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATAATCC 20127878 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || | | | || ||| ||||| || ||||| |||||||| |||| |||| || Sbjct 20127879 C-TACCTTATCGACCGCAACT-TTTGTATTTATTATCGCCTTCATCACTGCCCCTCTCGT 20127936 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 |||| |||| | || | | ||||| |||||||| || || Sbjct 20127937 -------------------GAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTAT 20127977 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 20127978 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 20128035 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 20128036 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 20128095 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | | | ||||| || ||||||||||| || | || || Sbjct 20128096 CACTTCTTACTTGGTGTAGCTTGTCATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 20128155 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 20128156 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 20128215 Query 19147 TTCCTTGTCTATCCATTTGGTCAAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 ||| | || || ||||||||| ||| || | || | ||||||||| || || Sbjct 20128216 TTCTTGAATTACCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATA 20128272 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||||| ||||||| ||| ||||||||||||| || ||||||||||| ||||| || Sbjct 20128273 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCA 20128332 Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 20128333 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 20128392 Query 19324 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGG 19382 || |||| || || | ||| | | ||||| |||||| | | |||| || | || Sbjct 20128393 TC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 20128451 Query 19383 CTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGG 19442 |||| ||||| ||||| |||||||||||||| ||||| || |||||||| |||||||| Sbjct 20128452 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 20128511 Query 19443 TCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGC 19502 || | || ||||| || || || ||||| ||||| |||| ||||| |||| Sbjct 20128512 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCGTTACACTTCTTCTTGGT 20128571 Query 19503 TGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAA 19562 ||||||||||| || || |||||||| | || | || | || || ||||| ||||| Sbjct 20128572 AGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 20128631 Query 19563 CTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATAC 19622 | || || || || || ||||| || | |||| | | | ||||| || ||| |||| Sbjct 20128632 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATAC 20128691 Query 19623 TTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGC 19682 ||||||||| || |||| |||||||| || || | || |||||||||||||||||||| Sbjct 20128692 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 20128751 Query 19683 TCATAACTTCCCACTTGA 19700 ||| |||||||| || || Sbjct 20128752 TCACAACTTCCCTCTAGA 20128769 >seq10 Length=20731201 Score = 372 bits (412), Expect = 9e-99 Identities = 447/605 (74%), Gaps = 18/605 (3%) Strand=Plus/Plus Query 19100 GGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATC 19159 ||||| |||||| || |||||||||||||| || || |||| || ||| | | || | Sbjct 18975644 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACC 18975703 Query 19160 CATTTGGTCAAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCA 19216 | ||||||||| ||| |||| || | ||||||||| || || |||||| |||| Sbjct 18975704 CTATTGGTCAAGGAAGTTTCTTT---GATGGTATGCCTTTAGGAATATCTGGTACTTTCA 18975760 Query 19217 ACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCG 19276 ||| ||| ||||||||||||| || ||||||||||| ||||| | || |||||| | | Sbjct 18975761 ACTTTATGATTGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAG 18975820 Query 19277 GTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGT 19336 |||| |||||||| |||||||| || ||||||||||| ||||| ||||| |||| || Sbjct 18975821 GTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACC 18975879 Query 19337 CCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGG 19395 || | ||| | | ||||| |||||| | | |||| || | || |||| ||||| Sbjct 18975880 TCTAGTTTGATCGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGT 18975939 Query 19396 CAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTC 19455 ||||| |||||||||||||| ||||| || |||||||| |||||||| || | || ||| Sbjct 18975940 CAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTC 18975999 Query 19456 CAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTG 19515 || || || || ||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 18976000 CAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 18976059 Query 19516 GTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTT 19575 || || |||||||| || | || | || || ||||| ||||| | || || || Sbjct 18976060 GTAGGGATTTGGTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTC 18976119 Query 19576 AACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATT 19635 || || ||||| | | |||| | | | ||| ||||||||||||| || Sbjct 18976120 AATTTCAACCAATATGTAGTTGATAGCCA----------ATTAATACTTGGGCTGATATC 18976169 Query 19636 CTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCA 19695 |||| |||||||| || || | || ||||||||||||||||||||||| |||||||| Sbjct 18976170 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCT 18976229 Query 19696 CTTGA 19700 || || Sbjct 18976230 CTAGA 18976234 Score = 149 bits (164), Expect = 2e-31 Identities = 163/213 (77%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 19163 TTGGTCAAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACT 19219 |||||||||| || || | || | ||||||||| || || |||||| ||||||| Sbjct 9553649 TTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACT 9553593 Query 19220 ACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTG 19279 ||| ||||||||||||| || ||||||||||| ||||| || || |||||| | |||| Sbjct 9553592 TTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTG 9553533 Query 19280 TCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCT 19339 | |||||||| |||||||| || ||||| ||||| ||||| ||||| |||| || || Sbjct 9553532 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC-CTTGGTAACCTCT 9553474 Query 19340 CGCTTG-TGCGTGAAACTACTGAAGAGGTATCT 19371 | ||| | | ||||| |||||| | | |||| Sbjct 9553473 AGTTTGATCAGGGAAACCACTGAAAACGAATCT 9553441 >seq12 Length=23561512 Score = 147 bits (162), Expect = 6e-31 Identities = 203/279 (73%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| || || |||||||| ||||||| | Sbjct 9700322 ACTGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCC 9700381 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| |||||||| ||||| ||||| | Sbjct 9700382 C-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGC 9700439 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || |||| |||| | || | | ||||| |||||||| || || Sbjct 9700440 AGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTAT 9700499 Query 18909 ATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGA 18968 || || || | |||| | | ||| |||||| | ||||| ||| |||||||||| Sbjct 9700500 CTCTGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGA 9700559 Query 18969 AGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007 |||| || ||||||| ||| | ||||| || || || Sbjct 9700560 AGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCC 9700598 Score = 125 bits (138), Expect = 2e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 19504 GCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAAC 19563 ||||||||||| || || |||||||| | || | || | || || ||||| ||||| Sbjct 9700731 GCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAT 9700790 Query 19564 TTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACT 19623 | || || || || || ||| | || | |||| | | | ||||| || ||| ||||| Sbjct 9700791 CTAAACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACT 9700850 Query 19624 TGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCT 19683 |||||||| || ||||||||||||| || || | | ||||| |||||||||||| || Sbjct 9700851 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACT 9700910 Query 19684 CATAACTTCCCACTTGA 19700 || |||||||| || || Sbjct 9700911 CACAACTTCCCTCTAGA 9700927 >seq2 Length=33962743 Score = 98.7 bits (108), Expect = 3e-16 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 19522 ATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTT 19581 |||||||| | || | || | || || ||||| ||||| | ||||| || || || Sbjct 14982352 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14982293 Query 19582 AACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 19641 ||||| || | |||| | | | ||||| || ||| ||||||||||||| || |||| Sbjct 14982292 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14982234 Query 19642 CGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 ||||| || || | | || ||||||||||||||||||||||| Sbjct 14982233 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 14982190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141142400489844