Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 185 1e-41 >seq6 Length=27870862 Score = 185 bits (204), Expect = 1e-41 Identities = 322/457 (70%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 1267695 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1267636 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || |||| || | | |||| || || Sbjct 1267635 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCAC-CCGAGCGCCATGAGCAGCCG 1267577 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| |||| |||||| |||| ||| | || Sbjct 1267576 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1267517 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| |||||||| || || ||||| | | Sbjct 1267516 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1267458 Query 129966 GAATGGTCTCCGTGCCAGGTCTA--TTGC---GCA--AAGTCTT-GAAGAGTTCCACGGC 130017 | | | |||| | ||| | |||| | | | ||| | || ||| || ||| Sbjct 1267457 GGACG-----CGTGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 1267406 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || ||||||||||||||| ||||||||||| || || |||||| || || || Sbjct 1267405 GAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 1267346 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| || || || ||||| || |||||||||||||| Sbjct 1267345 CATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCC 1267286 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| || || ||||| || | ||| ||||| || ||| Sbjct 1267285 CTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1267249 Score = 168 bits (186), Expect = 8e-37 Identities = 317/454 (70%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 ||||| || || ||||||||||||||||| ||||| || | || | ||||| ||||| Sbjct 7610333 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGG--GATATGAGCTCCA 7610390 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGA 129844 | | || || ||||| ||| | || | || ||| || | | ||||||| Sbjct 7610391 TCCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAG-CCGAGCGCCATGAGGAGG 7610449 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTT 129903 || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | Sbjct 7610450 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 7610509 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || ||||||||||| ||| |||| || |||| ||||| || || || ||||| | Sbjct 7610510 ACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTC 7610568 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | | | || | | | | ||| | | ||| | || ||| || ||| || Sbjct 7610569 GCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 7610625 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 7610626 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 7610685 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| ||||||||||| | |||||| || || || || ||||| ||||||||||||||||| Sbjct 7610686 GAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTC 7610745 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | ||| ||||| || ||| Sbjct 7610746 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 7610779 Score = 127 bits (140), Expect = 3e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 27504284 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 27504343 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| |||| || || | | | |||| ||||||||||||||| Sbjct 27504344 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 27504403 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCAGGCATACCACCCGCACTGCG 14229 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 27504404 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 27504462 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||||||||| ||||| ||||| || || || | ||| Sbjct 27504463 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 27504522 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 27504523 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 27504582 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || |||| || || ||| || || | || || |||| ||| || || || || Sbjct 27504583 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 27504642 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 27504643 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 27504699 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || ||||||||| | ||| || || || || |||| ||| || || | ||||| Sbjct 24747144 TCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAA 24747203 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||||||||||| | ||||| | || || || | ||||||||| || | Sbjct 24747204 CCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACCA 24747263 Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275 ||| | | | |||| | || || || ||||||||||| | || || || || || Sbjct 24747264 ATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGA 24747323 Query 14276 TGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAA 14333 ||| || || |||| |||| ||| || || | |||||| || || |||| Sbjct 24747324 GCATTCTCCTTTGC--CTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGACAA 24747381 Query 14334 ACATCTCCACAAA 14346 ||||||||||||| Sbjct 24747382 ACATCTCCACAAA 24747394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618405685180080