Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 >seq6 Length=27870862 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| ||||| || Sbjct 1267249 CTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATT 1267308 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 1267309 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 1267368 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 1267369 GCTCATCTCCCGCGACGAGGGTCTCCAC 1267396 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 7610779 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 7610720 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 7610719 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 7610660 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 7610659 GCTCATCTCCCGCGACGAGGGCCTGCAC 7610632 Score = 113 bits (124), Expect = 5e-20 Identities = 274/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 27504296 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 27504355 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||| |||| | ||| | | |||| ||||||||||| ||||| || |||||| Sbjct 27504356 GCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 27504415 Query 9644 ATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 || || || |||| |||||||| | | | | | ||||||| || ||| | || || Sbjct 27504416 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 27504474 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAG 9760 ||||||||| |||||||||||||||||||| || | || || | || || || Sbjct 27504475 GGCATCAATTTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGAAC 27504532 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 || |||| || | ||| || ||||| || |||| ||| || || | | |||| Sbjct 27504533 AGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCG 27504592 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || || ||| || || | || || || | ||| || || || || ||||| || Sbjct 27504593 CAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCG 27504652 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 || || ||| || |||| | |||| | | | || |||||||| || Sbjct 27504653 GTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 27504699 Score = 102 bits (112), Expect = 1e-16 Identities = 231/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 24747143 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 24747202 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 24747203 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 24747256 Query 9676 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 ||||||| | ||| | |||| | || || |||||||| ||||||| || || || Sbjct 24747257 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 24747316 Query 9730 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||| || ||| || || |||| |||||||| || || || ||| || || Sbjct 24747317 GCAAGGAGCATTCTCCTTTGC--CTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACT 24747374 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 24747375 CCGACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTC 24747433 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| || ||| || | ||||||||| || || || Sbjct 24747434 CCCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 24747475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583232963878320