Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 190 2e-43 >seq6 Length=27870862 Score = 190 bits (210), Expect = 2e-43 Identities = 572/863 (66%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631 |||||||| | | |||| | || ||||| ||| | | || |||||| | | |||| Sbjct 1266846 GGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGG 1266905 Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGC 59688 || | |||||| ||| ||| | | |||||| ||| |||||||| | Sbjct 1266906 AGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGACGAGCGCC 1266965 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | ||| || || || |||||||||||||| ||||| || ||| | || || Sbjct 1266966 ACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACC 1267025 Query 59749 TAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | | ||| || || ||| | |||||||| || | ||||||| | Sbjct 1267026 TCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCT 1267082 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || |||| |||||||| |||| ||||||||| || |||| | || Sbjct 1267083 TCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTAC 1267141 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | || ||||| ||||| || || |||||| || Sbjct 1267142 ATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTG 1267201 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982 | || || || |||||||||| ||||| || | | |||| || || | | Sbjct 1267202 CGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGC--TTCGCCGAGC 1267259 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | ||| | || || || ||||| || || ||||||||||| || || ||||| || || | Sbjct 1267260 GGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCT 1267319 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| ||||| || |||||||||||||| | |||||||||||||| || |||| Sbjct 1267320 TCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCC 1267379 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAA 60160 | |||||||| ||||| || || || || | ||||| | ||| || || Sbjct 1267380 GCGACGAGGGTCTCCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAAG 1267438 Query 60161 AT-GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAG 60218 | | | || | | || |||| || | | | | || || | ||||| ||| Sbjct 1267439 CTCGACGAGTCACG--CGTCCAGGAGATCGTCGCCGACGCCGTG-GACATCGAGAGGGAG 1267495 Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278 ||| || || ||||| || | ||| | || ||| ||| | |||| ||| Sbjct 1267496 TTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAG 1267555 Query 60279 TACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAGGACCAATTTAC 60335 ||||| |||| ||||| ||||| |||||||| | | || | | || || ||| Sbjct 1267556 TACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGC--TCGGGTGCAAGA-AGATGTAC 1267612 Query 60336 GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTC 60395 ||| ||||| ||||||||||||||| |||||| || | || |||||||||||| Sbjct 1267613 AACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTC 1267672 Query 60396 TTTGAGAAGCGGGTCGGGGATTA 60418 || |||||||| ||||| || || Sbjct 1267673 TTCGAGAAGCGCGTCGGCGACTA 1267695 Score = 187 bits (206), Expect = 3e-42 Identities = 587/892 (66%), Gaps = 33/892 (4%) Strand=Plus/Minus Query 59545 CCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAG 59604 ||| ||| ||| | | || || || |||||||| | | |||| | || ||||| | Sbjct 7611209 CCGAGCGATTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGG 7611150 Query 59605 CGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGG 59664 || | | || |||||| | | |||||| | |||||| ||| ||| | | |||| Sbjct 7611149 CGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGG 7611090 Query 59665 ACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGG 59721 || ||| |||||||| || |||||| || || ||||||||||| | Sbjct 7611089 ACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCG 7611030 Query 59722 CGAGTGATGGAATTGTGATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGA 59778 | || || || ||| | || || | | | | | | | ||| || || ||| Sbjct 7611029 CCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGG 7610973 Query 59779 TTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAG 59837 | |||||||| || | ||||||| | ||| ||| || |||| |||||||||||| Sbjct 7610972 TCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGC-CATCGAGAACATCCACTCCGAG 7610914 Query 59838 ACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTC 59897 | ||||||||| || |||| | | || || | ||||||| | |||||| Sbjct 7610913 ATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGGCTGTTC 7610854 Query 59898 CGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT- 59956 || ||||| || || ||| || || | || || || |||||||||| ||||| Sbjct 7610853 CGCGCCATCGACACCGTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATC 7610794 Query 59957 GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCT 60015 || | | |||| || || | || ||| | || || || ||||| || || |||| Sbjct 7610793 GACGGCGGCGAGCGC--TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCT 7610736 Query 60016 TCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCC 60075 ||||||| ||||| ||||| || || ||||||||||| ||||| || ||||||||||||| Sbjct 7610735 TCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCC 7610676 Query 60076 TGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGA 60135 | | |||||||||||||| || ||||| ||||||||||| || || || || || Sbjct 7610675 TCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGC 7610617 Query 60136 C-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCACAAGATTGT-T 60191 | ||||| | ||| | || || | | | | | | | |||| || Sbjct 7610616 CTCCTCTACGACCTCCTCCGCGGCAA--GCTCGACGAGGCGCGCGTCCGCGAGATCGTCG 7610559 Query 60192 CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATA 60251 | | | | | || | ||||| |||||| || || ||||| || | ||| | Sbjct 7610558 CCGACGCCGT-CGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTC 7610500 Query 60252 GGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATG 60308 || ||| ||| | |||| |||||||| |||| ||||| ||||| ||||||| Sbjct 7610499 GGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATG 7610440 Query 60309 --GCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGA 60366 || | | | ||||| || ||| ||| ||||| ||||||||||||||| Sbjct 7610439 GCGCTCGGCTGCAAGAAG-----ATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGC 7610385 Query 60367 CCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| || || | || |||||||||||||| |||||||| ||||| || || Sbjct 7610384 TCATATCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 7610333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548498621653920