Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 134 2e-26 seq1 93.3 5e-14 seq7 91.5 2e-13 seq12 89.7 6e-13 seq10 89.7 6e-13 seq3 89.7 6e-13 seq2 89.7 6e-13 seq5 82.4 8e-11 >seq6 Length=27870862 Score = 134 bits (148), Expect = 2e-26 Identities = 276/403 (68%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||||| | ||| |||||||| ||||| ||||| |||| Sbjct 1267353 AGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAG 1267294 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || |||||||| || || | ||||| | || ||| | | Sbjct 1267293 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCG 1267237 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 1267236 TCGATCCATCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCG 1267177 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | | || | || ||| |||||| Sbjct 1267176 CGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTACGTCTCGAGCAGAAGCGAGTAC 1267117 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | ||||||| | || ||||| || Sbjct 1267116 ATCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGC 1267058 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | |||||||| || ||||| Sbjct 1267057 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGC 1266998 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| || || || || || ||||||||||| ||| Sbjct 1266997 CGCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCG 1266955 Score = 131 bits (144), Expect = 2e-25 Identities = 275/403 (68%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 7610675 AGGCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 7610734 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || |||||||| ||||| | ||||| | || ||| | | Sbjct 7610735 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 7610791 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 7610792 TCGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCCGGGACGGTGTCGATGGCG 7610851 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| || | ||||||| || || || | | || | || || |||||| Sbjct 7610852 CGGAACAGCCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 7610911 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | |||||||| || Sbjct 7610912 ATCTCGGAGTGGATGTTCTCGATGG-CGATCTGGAATCCGTAGAAGGCGCGCGCCTCGGC 7610970 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | ||||||||||| ||||| Sbjct 7610971 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 7611030 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 |||||| || || || || ||| ||||||||||| ||| Sbjct 7611031 GGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 7611073 >seq1 Length=39866532 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1601830 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1601771 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1601770 TGAGCTACGAAAGCAA 1601755 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 29748570 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 29748511 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 29748510 TGAGCTACGAAAGC 29748497 >seq7 Length=26200591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1603536 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1603477 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 1603476 TGAGCTACGAAAGCTAA 1603460 >seq12 Length=23561512 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3309132 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3309191 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 3309192 TGAGCTACGAAAGC 3309205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 23172378 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 23172437 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 23172438 TGAGCTACGAAAGC 23172451 >seq10 Length=20731201 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 308438 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 308379 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 308378 TGAGCTACGAAAGC 308365 >seq3 Length=34446443 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 6487625 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6487684 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 6487685 TGAGCTACGAAAGC 6487698 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 30433467 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 30433526 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 30433527 TGAGCTACGAAAGC 30433540 >seq2 Length=33962743 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 23937142 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 23937201 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 23937202 TGAGCTACGAAAGC 23937215 >seq5 Length=26652778 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2929184 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2929243 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 2929244 TGAGCTACGAGAGCTAA 2929260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189884116400