Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq8 473 1e-128 seq10 336 3e-87 seq12 134 2e-26 seq2 120 4e-22 >seq8 Length=25958679 Score = 473 bits (524), Expect = 1e-128 Identities = 602/827 (73%), Gaps = 6/827 (1%) Strand=Plus/Plus Query 176276 TACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGAC 176335 |||| || |||||||| || ||||| || || | | || | || || |||||| Sbjct 20127956 TACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGAT 20128015 Query 176336 TACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGAC 176395 | ||||| |||||||| |||||||| ||| | ||||| || ||| | |||||||| || | Sbjct 20128016 TGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTC 20128075 Query 176396 CATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCC 176452 | || | || |||| | |||||| | | ||| | ||||| | ||||| || Sbjct 20128076 CTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTCATATGGGTCGTG 20128132 Query 176453 AATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 176512 | |||||||| |||| | | || || |||||||||||||| ||||||||| || || | Sbjct 20128133 AGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 20128192 Query 176513 CAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTG 176572 | || | || || | || |||||| | || || | ||||||||| |||||||| Sbjct 20128193 CTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAGGAAGTTTCTCTG 20128252 Query 176573 ATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGC 176632 ||||||||||| | || || || ||||| |||||||||||| |||||||||| ||||||| Sbjct 20128253 ATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 20128312 Query 176633 ACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTC 176692 | ||||| || ||||| ||||| || ||| | || ||||| ||||| || || || || | Sbjct 20128313 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCC 20128372 Query 176693 TTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAA 176752 | ||| || ||||| || | || || ||| | | || || || || |||| Sbjct 20128373 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAA 20128432 Query 176753 ACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAG 176812 ||||||| || | ||||||| ||| || ||||| |||||||| || || ||||| | Sbjct 20128433 ACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGG 20128492 Query 176813 CTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAA 176872 | || || ||||| ||||| || | |||||||| |||||| ||| || ||||| | Sbjct 20128493 CCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTT 20128552 Query 176873 GTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTG 176932 | ||||||||| | | ||| | || || || | || ||||| ||||| | ||| Sbjct 20128553 CGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTA 20128612 Query 176933 TTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACT 176992 || | || ||||| ||||| || ||||| ||||| |||||||| ||||| | || | | Sbjct 20128613 TTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCC 20128672 Query 176993 CTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAG 177052 ||| || ||| ||| |||| |||||| | |||||||| || ||||||||||||| Sbjct 20128673 AAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAG 20128732 Query 177053 TTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 | |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 20128733 TAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 20128779 >seq10 Length=20731201 Score = 336 bits (372), Expect = 3e-87 Identities = 436/604 (72%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 176496 TGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGG 176555 ||||||||| || || || || | || || | || |||||| | | || || | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 176556 TCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTT 176615 ||||||| ||||| ||||||||||||| | || || || ||||| |||||||||||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 176616 TGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGG 176675 ||||||||| ||||| || ||||| || ||||| | ||| || ||| | || ||||| || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 176676 TGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGT 176735 ||| || || || || || || || ||||| || | || || ||| | | Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 176736 TAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGA 176795 | || || || ||||||||||| || | ||||||| ||| || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 176796 GACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTC 176855 ||| || || ||||| || || || ||||| ||||| || | |||||||| |||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 176856 TTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTG 176915 ||| || ||||| || | | ||||||||| | || || | || || || | || || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 176916 GTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 176975 ||| | ||| | ||| || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 176976 GTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGC 177035 | ||| | || | | ||| ||| |||| |||||| | |||||||| Sbjct 18976131 ATATGTAGTTGATAGC----------CAATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 177036 AAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 177095 || |||||||||||||| |||||||| |||||||||||||||||||| || ||||| || Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Query 177096 TGCT 177099 |||| Sbjct 18976241 TGCT 18976244 Score = 147 bits (162), Expect = 3e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||||||||| ||||||||||||||||||| | || || || ||||| |||||||||||| Sbjct 9553647 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 9553588 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCA 176673 |||||||||| |||||||| ||||| || ||||| ||||| || ||| | || ||||| Sbjct 9553587 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 9553528 Query 176674 GGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTT 176733 ||||| || || || || || ||| || ||||| || | || || ||| | Sbjct 9553527 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 9553468 Query 176734 GTTAGAGAGACAACCGAAAACGAATC 176759 | || || || || ||||||||||| Sbjct 9553467 ATCAGGGAAACCACTGAAAACGAATC 9553442 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 |||||| || || || |||| ||||| || || ||||| || || ||||| || ||| Sbjct 7035169 AATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCA 7035110 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||||||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 7035109 ACAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 7035063 >seq12 Length=23561512 Score = 134 bits (148), Expect = 2e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||| ||||| | ||| || | || ||||| ||||| || ||||| ||||| ||| Sbjct 9700749 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTC 9700808 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||| | ||||| | || | | ||| || ||| ||| |||| |||||| | || Sbjct 9700809 AACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAT 9700868 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||||| || |||||||||| ||| || ||||| |||||| ||||||||||||| || ||| Sbjct 9700869 CGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACTCACAACTTCCCTCTAGAC 9700928 Query 177091 CTTGCTGCT 177099 || |||||| Sbjct 9700929 CTAGCTGCT 9700937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 9700349 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 9700407 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || | ||||| || |||||||| || | || Sbjct 9700408 TTTATTATCGCCTTCATCGCTGCCCCTCCAGCAGATATTGATGGTATTCGTGAGCATGTT 9700467 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || | | |||| || |||||||| || ||||| || | | | || | || | Sbjct 9700468 TCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTACCATTATTCCTACTTCTACT 9700527 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | ||||| ||| |||| |||||||| ||| | ||||| || ||| | ||| Sbjct 9700528 GCGATCGGATTGCACTTTTACTCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 9700587 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTC 176421 ||||| || || || | || |||| | |||||| Sbjct 9700588 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 9700623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || || || || ||| || | || ||| | | ||| || || Sbjct 9412421 ACCTATAACGATTCACTACCCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCG 9412480 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || ||||| || ||||| || ||||| | ||||||||||| Sbjct 9412481 AATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGCGTATGCCCTAT 9412540 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || | |||| || | | Sbjct 9412541 AGATCTACCTCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAGGAAACAATTGCTTA 9412599 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTA 19525 ||||| || || || |||| ||||| || || ||||| || || ||||| Sbjct 9412600 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAATTGTGTTGAGTA 9412651 >seq2 Length=33962743 Score = 120 bits (132), Expect = 4e-22 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||| ||||| | ||| || | || ||||| ||||| || || || ||||| ||| Sbjct 14982352 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 14982293 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAAC 177030 ||||| ||||| | || | | ||| || ||| ||| |||| |||||| | ||| Sbjct 14982292 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 14982234 Query 177031 CGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 |||||||| |||| ||||||||| |||||||| |||||||||||| || Sbjct 14982233 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 14982186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603465598229760