Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq6 102 7e-17 seq5 98.7 9e-16 seq2 96.9 3e-15 seq4 86.0 5e-12 >seq1 Length=39866532 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39052 TTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAA 39111 |||| ||| || | | ||| | ||||| || ||||| ||| || || || || || Sbjct 23562508 TTCAGGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 23562449 Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 ||||| || || || |||| || ||||| ||||| || || || || ||||||||||| Sbjct 23562448 TCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCC 23562389 Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 | || | | ||| |||||| | ||| |||| || | ||| ||||| | Sbjct 23562388 GGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTC 23562329 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| |||| |||||| | || |||||||| || || || ||||| ||||||| Sbjct 23562328 TCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCT 23562274 Score = 102 bits (112), Expect = 7e-17 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 11683504 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCC 11683563 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||||| || | | ||| || Sbjct 11683564 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTT 11683623 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || || |||||||| |||| ||||| Sbjct 11683624 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 11683682 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | | || |||||||| || || || ||||| |||||||| ||||| Sbjct 11683683 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT--CGCCG 11683727 >seq6 Length=27870862 Score = 102 bits (112), Expect = 7e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || ||||| ||||| || || | Sbjct 25466604 GCGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCC 25466545 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| || || ||||| || |||||||||||||| | ||| | || ||| || Sbjct 25466544 ATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 25466485 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || ||| |||||| || || | || | Sbjct 25466484 GTCCTGGATCTTCGCCTTCA-CGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAA 25466426 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | | || || ||||| || || || ||||| |||||| Sbjct 25466425 TGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 25466388 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || |||||||| || || |||| || ||||| Sbjct 25466135 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGC 25466076 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 25466075 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 25466016 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | || ||| |||||| || || | || || | || || || Sbjct 25466015 GCCTTCA-CGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATGGTCTTGCCAGT 25465957 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 ||| || || || ||||| |||||| Sbjct 25465956 CAGGGTCTTCACGAAGATCTGCATC 25465932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || | || |||||||| ||||| || || Sbjct 25465212 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 25465153 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | || ||| |||||| ||| || |||| | Sbjct 25465152 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 25465093 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || |||||| || || | ||||| | || || || || || || || Sbjct 25465092 GTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 25465033 Query 39273 AAAGATTTGCATCT 39286 |||||| ||||||| Sbjct 25465032 AAAGATCTGCATCT 25465019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| || || || || || |||||||| || || |||| || Sbjct 25465913 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCC 25465854 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || |||||||||||||| | ||| | || ||| |||||| | Sbjct 25465853 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 25465794 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | | | | ||| || ||||| || || | ||||| | || Sbjct 25465793 ATCTTGGCCTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTG 25465734 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 25465733 CCAGTCAGGGTCTTGACGAAGATCTGCAT 25465705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||||| || | || ||| ||| | || || ||| || || || || || || ||||| Sbjct 25465703 CCTCCCCTGA-GCCTAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 25465645 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || || |||| || ||||| ||||| || || || |||||||||||||| | ||| Sbjct 25465644 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 25465585 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | || ||| |||||| ||| || || | ||| | | | ||| || ||||| | Sbjct 25465584 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCGA 25465526 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || | ||||| | || || ||||| || || || ||||| ||||| Sbjct 25465525 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 25465477 >seq5 Length=26652778 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| |||| ||| | || | || || ||| ||| || || || || || || ||| Sbjct 21799769 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 21799710 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || || ||||| ||||| ||||| || |||||||||||||| | ||| Sbjct 21799709 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 21799650 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || || | | ||| | | | ||||| ||||| || Sbjct 21799649 ATCCCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCAATAGTATCAGAAGACTCAAC 21799591 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || |||| || || |||||||||||||| Sbjct 21799590 CTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21799543 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112 || |||||| || | || ||| ||| | || || ||| |||||| || || || |||| Sbjct 7981028 CATGCCTCCCCTCA-GCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAAT 7981086 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTG-TTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 | || || || ||| |||| ||||| || |||||||||||| || || ||||||||||| Sbjct 7981087 CTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCA 7981146 Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 | || | | ||| |||||| || || |||| | | | ||| || ||| Sbjct 7981147 GGTGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGAC 7981206 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || || || | || || | || || || || || || |||||||| ||||||| ||| Sbjct 7981207 TCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATCTGTAC 7981265 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || | ||| ||| || || || || ||||| || | || || | || || Sbjct 7980593 CACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCCTC 7980652 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || || |||||||| || | ||| | |||||| |||||| | Sbjct 7980653 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCC-T 7980711 Query 39195 GATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | || || ||| | || || || |||||| || |||| || || ||| Sbjct 7980712 GAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTT 7980771 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| || || |||||||||||||| Sbjct 7980772 TGCCGGTCAATGTCTTGACAAAGATTTGCAT 7980802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || ||||| || || || | Sbjct 3217379 GCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 3217320 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || || ||||||||||| | ||| | | || || Sbjct 3217319 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTT 3217260 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 3217259 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 3217201 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 3217200 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3217161 >seq2 Length=33962743 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | || | || ||||| ||| || || || || || || Sbjct 3067597 CATGCCTCCCCTGAGACGGAGGACAAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTC 3067656 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || | |||| |||||||| ||||| ||||| || |||||||||||||| | Sbjct 3067657 AGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGG 3067716 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 ||| | || ||| |||||| ||| || |||| ||| | | | || || || | Sbjct 3067717 GGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGATT 3067775 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | || || ||||| || || |||||||| ||||| Sbjct 3067776 CCACCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 3067827 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || || ||||| || | | Sbjct 3067384 GCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCC 3067443 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| || Sbjct 3067444 ATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 3067503 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || |||| | | | ||||| |||||||| || | ||||| Sbjct 3067504 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGAT 3067563 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || || ||||||||||| Sbjct 3067564 GGTCTTGCCGGTCAGAGTCTTCACGAAGATTTGCAT 3067599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 || || || ||||| || | | || || ||||| ||||| || || || ||||||||| Sbjct 3067959 TTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGC 3068018 Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC 39224 ||||| | ||| | || |||||||||| ||| || |||| ||| | | | || || Sbjct 3068019 TGGTCTGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTC 3068077 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || | |||||| | || || ||||| || || |||||||| ||||| Sbjct 3068078 AGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 3068137 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || |||||||| || || | || || Sbjct 3067162 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTC 3067221 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | ||| | || ||| |||||| Sbjct 3067222 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 3067281 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| || |||| ||| | | | || || ||| ||| || |||| ||||| Sbjct 3067282 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGCT---CTCAACCTCCAGGGTGATGG 3067337 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 3067338 TCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 3067371 >seq4 Length=30521686 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| || | ||| ||| || || || ||||| || ||| Sbjct 27324644 CCTCCACGAAGGCGGAGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCA 27324585 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| |||||||| ||||| || || || || ||||||||||| | || Sbjct 27324584 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGTGGA 27324525 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| ||| || || | | | | ||| || ||||| || Sbjct 27324524 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACC 27324465 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || || |||||||| ||||| Sbjct 27324464 TCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 27324418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429525612437834