Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 3e-11 >seq6 Length=48101398 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 151012 GTCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGGCCACG 151071 |||||||| ||||| |||| ||||| ||||||| ||| | | ||||||||| | | Sbjct 4214110 GTCTTCATCGGCCCGATCTTCTACCAGCGGCTGACCCACATGTCCGAGGACAAGGTGAAG 4214051 Query 151072 GTGCGCTGC-CGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||| | || ||| | ||| ||| | |||||| | |||| | ||||| Sbjct 4214050 TTCCGCAACACGGGGCCCGTGCACCC-GCTCACGCGGCAGCCGGTGGAGGACAAGAAGCG 4213992 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 ||| ||| |||||||||| ||||||||||| ||||||||| ||| || ||||| || Sbjct 4213991 GTTCGGTGGCGTCAAGTTCGGGGAGATGGAGCGAGACTGCCTCCTCGGCCATGGCGCTGC 4213932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608734489647520