Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq7 111 3e-19 seq4 105 1e-17 >seq7 Length=46770411 Score = 111 bits (122), Expect = 3e-19 Identities = 301/451 (67%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 35944344 GTACTCCCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 35944403 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| ||| |||| ||| | || |||||| | ||| | Sbjct 35944404 CCAGTCGAAGGGGTTGGCGACGTTATACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCG 35944463 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || | || |||| ||||||||| Sbjct 35944464 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGCCGCCGTTCATTCCGACGAGCGCGAC 35944523 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| |||| ||| | | || |||| || || || Sbjct 35944524 GGGGAGCG-CGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 35944582 Query 157497 GAACTCTCTCCCGCGGC-AGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | ||| || | ||| | ||| | | ||||| ||| | | | || Sbjct 35944583 GGACGC-GGCCCTCGTCGAGCTTGCCGCGGAGGAGATCGTAGAGGAG-GCAGGCGAAGTC 35944640 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | |||| | | Sbjct 35944641 GCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCC--GGCATG 35944698 Query 157615 CTGC--CGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCC 157672 || |||||||| |||||| ||||||||||||| || || ||| | |||||| Sbjct 35944699 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 35944758 Query 157673 AGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| || | ||| |||| Sbjct 35944759 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGA 35944789 >seq4 Length=49548238 Score = 105 bits (116), Expect = 1e-17 Identities = 300/451 (67%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 42841973 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 42842032 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | |||| ||| | ||| | Sbjct 42842033 CCAGTCGAAGGGGTTGGCGGCGTTGTACATCTTCCTGCACCCGAGCGCCATGAGCAGGCG 42842092 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || | || |||| ||||||||| Sbjct 42842093 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGGCGCCGTTCATGCCGACGAGCGCGAC 42842152 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| |||| ||| | | || |||| || || || Sbjct 42842153 GGGGAGCG-CGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 42842211 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | || || | ||| | | ||| | | ||||| ||| | | | || Sbjct 42842212 GGACGCGGGCCTCGTCG-AGCTTGCTGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 42842269 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | ||| | | Sbjct 42842270 GCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC--GGCATG 42842327 Query 157615 CTGC--CGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCC 157672 || |||||||| |||||| ||||||||||||| || || ||| | |||||| Sbjct 42842328 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCA 42842387 Query 157673 AGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| || | ||| |||| Sbjct 42842388 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGA 42842418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073653752509184