Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq1 89.7 5e-13 >seq4 Length=49548238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || | ||||| || ||||| || || ||||| || || Sbjct 2205553 TGGCCACCACGAAGGCGAAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCT 2205494 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || || ||||| || |||||| |||||||||| ||||| || || Sbjct 2205493 GCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGC 2205434 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || || | | || | ||||| | || |||| Sbjct 2205433 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCAGAGGACTCC 2205374 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | ||||||||||| | || || || || || |||||| Sbjct 2205373 ACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATA 2205323 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| || || | |||| || |||||||| || ||| Sbjct 2204836 GTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 2204777 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || ||||| |||||||| ||||| ||| || || Sbjct 2204776 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 2204717 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| | || ||| ||||| | ||| | ||||||||||| | || Sbjct 2204716 ACGTTGTCAATTGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 2204657 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 2204656 TTAACAAATATCTGCAT 2204640 >seq1 Length=61571842 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || |||||||| || || | |||| | || || | ||| || |||||| | Sbjct 3014541 CTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGCCCATCCTCCAACTGCTTGCCAGCAAA 3014600 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||||||| ||||| || || || ||||| || ||||| ||| || || | | Sbjct 3014601 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 3014660 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||||| || ||||||||||| ||| | |||||||| || | || || || Sbjct 3014661 GTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTAAC 3014720 Query 139753 GAATATTTGCAT 139764 ||| || ||||| Sbjct 3014721 GAAAATCTGCAT 3014732 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || | ||| | || ||||| || || ||||| || || Sbjct 2549363 TGACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2549422 Query 139595 CTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 | ||||| || | || || ||||| || ||||| |||| || | ||||| || || Sbjct 2549423 GCAAGTGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCCGG 2549481 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| || || | | || | ||||||| | ||| Sbjct 2549482 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTC 2549541 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 2549542 CACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2549592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496013227849600