Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 104 3e-17 seq5 96.9 5e-15 >seq4 Length=49548238 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 42842259 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 42842318 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 42842319 CCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 42842377 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| ||||| || || | ||| Sbjct 42842378 GATGCCCTCAACGCAGGCGAAGGCGACGAGGCGCTC 42842413 >seq5 Length=59822759 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | |||||| | ||| | || | ||||| |||| ||| ||| Sbjct 16576287 CCACCTTGATCAACATAACGAGCGGTATCATTGAAGACACGTAACATAGGAACAATTCCA 16576228 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| || || || || || ||| | ||||||||||| |||||| Sbjct 16576227 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAATTGAG 16576168 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| |||| || || |||| || | || ||| || | ||||||||||| Sbjct 16576167 ACACCAATTCATCCAGCTTATTTACTTATGACAGCACATTCCTTCAGGGTATCATAGATT 16576108 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| ||||| |||| | || |||||||| Sbjct 16576107 CCCTCAATGCTGTCATCTTTCATACAGATGAGGAAACAGCT 16576067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718195285188320