Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 6e-14 seq1 84.2 3e-11 >seq5 Length=59822759 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | |||||| | ||| | || | ||||| |||| ||| ||| Sbjct 16576287 CCACCTTGATCAACATAACGAGCGGTATCATTGAAGACACGTAACATAGGAACAATTCCA 16576228 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||||| ||||| || || || || || ||| | |||||||||||| |||||| Sbjct 16576227 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAATTGAG 16576168 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| |||| || || |||| || | || ||| || | ||||||||||| Sbjct 16576167 ACACCAATTCATCCAGCTTATTTACTTATGACAGCACATTCCTTCAGGGTATCATAGATT 16576108 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| |||| | || |||||||| Sbjct 16576107 CCCTCAATGCTGTCATCTTTCATACAGATGAGGAAACAGCT 16576067 >seq1 Length=61571842 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 ||||| |||||||| || |||| || ||| |||||| ||||| | || ||||||| Sbjct 60058991 AACTCATCTCCCCAGCAATCAGCTAAACCTGGAGCTTCATTGGGACAAAACAGTGACCAC 60058932 Query 72007 TCTCCATCATCATT-TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 72064 | ||||| |||| ||| | || ||| || |||||||||||||| ||||| ||| || | Sbjct 60058931 TGTCCATTG-CATTGTACCCTTTCCATGAATAGATCAGGAATCCACAGAGC-ATAGAAAA 60058874 Query 72065 GATCTCTGGTTCTATGCTCCTC 72086 |||| || | | || |||||| Sbjct 60058873 GATCCCTTGCACGATTCTCCTC 60058852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671070508902880