Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 2e-11 >seq4 Length=49548238 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 156877 ATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGC 156936 ||| ||||||||||||| || ||||| || || | || |||||||| ||| | ||||| Sbjct 46294145 ATCCGCCAAACCTTGAACACCTATGCCAATTGGCCTGTGCCGCATATTTGATCTCTTTGC 46294204 Query 156937 AGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 156975 || |||| ||| ||| ||||| |||||||||||| || Sbjct 46294205 GGTCTCAACAGGATAGTAATTGATATCAATAATTTTGTT 46294243 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||||| ||| || || || || ||||||||||| ||| | ||| ||| ||||| Sbjct 4633285 ACCAAATGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCT-AATGTTCTCCCATCTTC 4633343 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 | ||| ||||||||| | ||||| | |||||| || || || ||||| || ||||| Sbjct 4633344 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 4633400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506962507076160