Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 187 4e-42 seq7 176 7e-39 >seq4 Length=49548238 Score = 187 bits (206), Expect = 4e-42 Identities = 565/857 (66%), Gaps = 22/857 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| | ||||| ||||| ||| ||||| ||||||| ||| ||||| || || Sbjct 42842812 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTC 42842753 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||| ||| | | ||||| || || | | || ||||| | || | || Sbjct 42842752 TCCGCCGACGCGCGGCACTGGGACGAGGCGCTGTCCCCCGAC-GAGCGCCACTTCGTCTC 42842694 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | | |||||||| |||| |||||| || ||||| ||| || || | || Sbjct 42842693 CCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCTTCGCG 42842634 Query 125198 ATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||| | || || || | | |||| | | ||| ||||| ||||| ||| | Sbjct 42842633 CTTCATGTCC-GACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGCCA 42842575 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 | |||||| | |||||||| |||||||| ||| | || | ||||| ||||| | || Sbjct 42842574 TCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGA-CGGC 42842516 Query 125317 AACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 || || || ||||| ||| |||||||| ||||| | | || ||||| Sbjct 42842515 GCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTGCCCGCCGTCCGCCGCAAGGCC 42842456 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCGTACGCCGACAGACTGGTGGC 125434 | |||| || || |||||||| | || | || ||||| |||| | || || || Sbjct 42842455 GACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCG----CCGAGCGCCTCGTCGC 42842400 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCA 125493 |||||| ||| |||||||||||||| ||||| | || |||| ||||||| ||||||| Sbjct 42842399 CTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCA 42842341 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| |||||||| || || || | |||||| | || || || ||||||| Sbjct 42842340 AGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGG 42842281 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 |||| ||||| ||||| ||| || || | || | || | ||| || || | Sbjct 42842280 GCCTGCACTGCGACTTCGCCTGCCTCCT------CTACGACCT-CCTCCGCAG-CAAGCT 42842229 Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 | | ||| | ||| | | || || |||| ||||| || || | ||||| Sbjct 42842228 CGA-CGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCG 42842170 Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACA 125733 | ||| | || || ||| | | ||||||||| || || ||| || |||||| Sbjct 42842169 TCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCCCTCATGAGCCAGTACA 42842110 Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCA 125793 | ||||| || || || || || || | | | || | ||||| ||||||||| Sbjct 42842109 TCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGGTGCAGGAAGATGTACAACGCCG 42842050 Query 125794 AGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853 || ||||| || | ||| ||| || || |||| ||||||||||| ||||||| Sbjct 42842049 CCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGA 42841990 Query 125854 AGAAGGTCAGCGAGTAC 125870 || ||| |||| ||| Sbjct 42841989 AGCGCGTCGGCGACTAC 42841973 >seq7 Length=46770411 Score = 176 bits (194), Expect = 7e-39 Identities = 582/887 (66%), Gaps = 30/887 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || ||| |||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 35945209 CCATGTTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 35945150 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | ||||||| ||| ||||| || || || ||| | | | ||||| | || | Sbjct 35945149 TCTGGACGGCCGAGGAGGTGGACCTCTCGGCCGACGCGCGCCACTGGGACGCGGCGCTCT 35945090 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 35945089 CCCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGC 35945031 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | || ||| | || || || | | |||| | | Sbjct 35945030 ATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCC-GACGTGCAGGTCGCGGAGGCG-C 35944973 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| ||||| ||| || |||||| | |||||||| |||||||| | Sbjct 35944972 GCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGC 35944913 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGAC 125348 || | || | ||||| ||||| | || || || || ||||| ||| |||||| Sbjct 35944912 TGCTGGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGAC 35944854 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | || ||||| | |||| || || |||||||| | || || Sbjct 35944853 ACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGGGAG 35944794 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| | || || || |||||| ||| |||||||||||||| ||||| Sbjct 35944793 CGCTTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGG 35944738 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || |||| ||||||| ||||||||||||||||| |||||||| || || || | Sbjct 35944737 CTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCT 35944679 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 35944678 CCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCT----- 35944624 Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 | || |||| | ||| | || || | ||| | ||| | | || || ||| Sbjct 35944623 -CTACGATCTCC--TCCGCGGCAAGCTCGA-CGAGGGCCGCGTCCGCGAGATCGTCGCCG 35944568 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | ||||| || || | ||||| | ||| | || || ||| | | || | Sbjct 35944567 ACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGAA 35944508 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || || ||| || ||||||| ||||| || || || || || || | | Sbjct 35944507 TGAACGGCGGCCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CATGG 35944451 Query 125767 TGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | |||| | ||||| || |||| | || ||||| || | ||| ||| | Sbjct 35944450 CGCTGGGCCACAAGAAGATGTATAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCT 35944391 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| ||||||||||| ||||||||| ||| | |||||| Sbjct 35944390 CGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTAC 35944344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740983352590880