Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4347 91.5 1e-13 >seq4347 Length=1781 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| ||||||| || | | ||||| Sbjct 1221 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 1162 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 1161 CAGCTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1102 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| | |||| |||| ||| ||||| || Sbjct 1101 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTT 1042 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || ||||| || ||||| Sbjct 1041 GCCAGTCAAGGTCTTCACAAAGATCTGCAT 1012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||| || || ||||| || || | || | ||||||| Sbjct 993 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTC 934 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || |||||||| ||| ||| | |||||| ||||| Sbjct 933 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 874 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| | |||| |||| ||| ||||| || Sbjct 873 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTT 814 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | || || || ||||| ||||| Sbjct 813 GCCTGTGAGGGTCTTAACGAAAATCTGCAT 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414531429262072