Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq211 149 1e-30 seq7 149 1e-30 seq4 125 2e-23 seq1 95.1 3e-14 >seq211 Length=21435 Score = 149 bits (164), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| ||||||| | ||| | || || || || || ||||| Sbjct 1252 GTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCATCCTCAAGCTGCTTTCCG 1193 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| || Sbjct 1192 GCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATCTTTGCCTTG 1133 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || | || ||||| || || || ||||| ||||| || || Sbjct 1132 ACATTGTCAATGGTGTCAG-AGCTCTCAACCTCAAGAGTTATGGTCTTCCCAGTGAGGGT 1074 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||||||||||||| Sbjct 1073 CTTCACAAATATCTGCATT 1055 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || || || | || || || ||||| || ||||||||| Sbjct 1057 ATTCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCA 998 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| || || || || || |||||||| || |||||||| || || || Sbjct 997 GCAAGCGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 938 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||||||||| || || ||||| || | ||| ||| || | || Sbjct 937 GGGATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGG-AGCTCTC 879 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || |||||||||||||| Sbjct 878 CACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 828 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| ||||| || |||| || || | || || || || || |||||| Sbjct 1480 GTAGACTCTTTCTGGATATTGTAATCAGCTAATGTCCGCCCATCCTCCAGCTGCTTTCCA 1421 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || || || || || || || || ||||| |||||||| || Sbjct 1420 GCAAAGATGATTCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 1361 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || ||||| || || |||||||| ||||||||||| Sbjct 1360 ACATTGTCAATTGTGTC-AGAGCTCTCGACCTCGAGCGTGATAGTCTTCCCAGTAAGTGT 1302 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 1301 CTTCACAAAGATCTGCAT 1284 >seq7 Length=46770411 Score = 149 bits (164), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| ||||||| | ||| | || || || || || ||||| Sbjct 21031319 GTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCATCCTCAAGCTGCTTTCCG 21031378 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| || Sbjct 21031379 GCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATCTTTGCCTTG 21031438 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || | || ||||| || || || ||||| ||||| || || Sbjct 21031439 ACATTGTCAATGGTGTC-AGAGCTCTCAACCTCAAGAGTTATGGTCTTCCCAGTGAGGGT 21031497 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||||||||||||| Sbjct 21031498 CTTCACAAATATCTGCATT 21031516 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || || || | || || || ||||| || ||||||||| Sbjct 21031514 ATTCCACCCCTCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCA 21031573 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| || || || || || |||||||| || |||||||| || || || Sbjct 21031574 GCAAGCGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 21031633 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||||||||| || || ||||| || | ||| ||| || | || Sbjct 21031634 GGGATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCG-GAGCTCTC 21031692 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || |||||||||||||| Sbjct 21031693 CACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 21031743 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| ||||| || |||| || || | || || || || || |||||| Sbjct 21031091 GTAGACTCTTTCTGGATATTGTAATCAGCTAATGTCCGCCCATCCTCCAGCTGCTTTCCA 21031150 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || || || || || || || || ||||| |||||||| || Sbjct 21031151 GCAAAGATGATTCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 21031210 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || ||||| || || |||||||| ||||||||||| Sbjct 21031211 ACATTGTCAATTGTGTC-AGAGCTCTCGACCTCGAGCGTGATAGTCTTCCCAGTAAGTGT 21031269 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 21031270 CTTCACAAAGATCTGCAT 21031287 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || ||| Sbjct 43522210 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCAAGCTGCTTGCCA 43522151 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || |||||||| ||||| ||||| Sbjct 43522150 GCAAAGATAAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTGGCTTTA 43522091 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||||| || || || ||||||||||| || || Sbjct 43522090 ACATTGTCAATGGTGTCGGATTACTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTC 43522031 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 43522030 TTCACAAAGATCTGCAT 43522014 >seq4 Length=49548238 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||||| || || | || || || || || || ||| Sbjct 2204836 GTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 2204777 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || ||||| || ||||| ||||| || || Sbjct 2204776 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 2204717 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || ||||| || || || ||||| || || || || Sbjct 2204716 ACGTTGTCAATTGTGTC-CGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 2204658 Query 104542 TTTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 2204657 CTTAACAAATATCTGCAT 2204640 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | ||| || || |||||||| || || |||| Sbjct 4633265 TTCCACCCCTGAGCCTCAGGACCAAATGAAGTGTTGACTCCTTCTGAATGTTGTAATCAG 4633324 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||||||||| ||||| || || || || | Sbjct 4633325 CTAATGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 4633384 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 4633385 GAATGCCCTCCTTGTCCTGAA 4633405 >seq1 Length=61571842 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | || || || || || || ||| Sbjct 2757032 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 2756973 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || || || || || || || ||||| ||||| || || Sbjct 2756972 GCAAAAATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2756913 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||| || | || ||||| | || || ||||| ||||| | || Sbjct 2756912 ACATTGTCGATGGTGTCG-GAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAAGGT 2756854 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 2756853 CTTCACGAAGATCTGCATT 2756835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151277608233104