Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq9 129 5e-25 >seq9 Length=72259479 Score = 129 bits (142), Expect = 5e-25 Identities = 173/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || |||| | | || |||| ||| | ||||||| Sbjct 9214940 ACGCCGGTGGATCCGAACCCTCCCTCGCCGCGCACGGTGGCGTCGAGGTCCTCCACCTCC 9214999 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | |||| ||||| ||| || || |||||||| | ||| Sbjct 9215000 GCGACCTCCGGCGCCGCGATCAC-CTCGATGATCATCTGGGCGATCCGGTCGCCGGGCTT 9215058 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||| || ||| |||| |||||| || | || || ||| |||||||||| Sbjct 9215059 CACGGCGAAGTCCGTGT--CCGAGTGGTTGAAGAGGATGACCCCGACGGGGCCGCGGTAG 9215116 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 || ||||| |||||||||||||||||||||||| ||||||| | |||||| || || Sbjct 9215117 TCCGCGTCGATCACGCCCGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGCCCCGA 9215172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430011484333856