Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6 113 2e-20 seq5 113 2e-20 seq7 109 3e-19 seq2 109 3e-19 seq3 107 1e-18 seq1 105 3e-18 seq9 104 1e-17 >seq6 Length=48101398 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 43996256 AAAAAAT-AATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 43996198 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||||||||||||||| |||||| Sbjct 43996197 GCTCTAACCAACTGAGCTAATAGGCCGT 43996170 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 44006172 AAAAAATAGATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 44006113 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 44006112 GCTCTAACCAACTGAGCTAATAGGCC 44006087 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 41075869 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 41075928 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 41075929 TGAGCTAATAGGCCG 41075943 >seq5 Length=59822759 Score = 113 bits (124), Expect = 2e-20 Identities = 90/107 (84%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| |||||||| ||| ||||||||| | | |||||||| |||||||||||||| Sbjct 3379547 TAGAAAAAATAAAAA--CAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 3379602 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTG 11540 ||||||||||||||| |||| |||||||||| ||||||| | |||| Sbjct 3379603 TTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCGTCTGCCATTG 3379649 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13818572 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13818513 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 13818512 TGAGCTAATAGGCCG 13818498 Score = 96.9 bits (106), Expect = 2e-15 Identities = 83/101 (82%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGA--ACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||| | | |||| |||| |||||||||| |||||||||||||||||| |||| Sbjct 6707549 TGGCCCATGCAGGTCTCGAGAACCTGCGACCTTCGCATTATTAGCACGACGCTCTAACCA 6707608 Query 11514 ACTGAGCTAATGGGCCGTCGACGATTGTGATTTTTCATCTA 11554 ||||||||||| ||||| | | |||| | ||| |||| || Sbjct 6707609 ACTGAGCTAATAGGCCGGCTAGGATT-TTCTTTGTCATTTA 6707648 >seq7 Length=46770411 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 11446 AAAATCAAA-----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 36235483 AAAATCAAAAGTGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 36235542 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 36235543 GACGCTCTAACCAACTGAGCTAATAGGCC 36235571 Score = 109 bits (120), Expect = 3e-19 Identities = 75/85 (88%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 36642756 AAAAATCA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 36642812 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 36642813 CTCTAACCAACTGAGCTAATAGGCC 36642837 Score = 107 bits (118), Expect = 1e-18 Identities = 78/91 (86%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 11444 AAAAAATCAAA-----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| ||| |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 34697619 AAAAAATAAAACTTGTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 34697560 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 34697559 ACGACGCTCTAACCAACTGAGCTAATAGGCC 34697529 >seq2 Length=61504503 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 43578980 AAAAAATCCA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 43579037 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 43579038 GCTCTAACCAACTGAGCTAATAGGCC 43579063 Score = 109 bits (120), Expect = 3e-19 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| | || || |||||| || ||||||||| | | |||||||| ||||||||| Sbjct 58682103 AAATAAACCATGAAGAAAAAA--AACATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 58682046 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 58682045 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 58682005 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 49286253 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 49286194 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 49286193 TGAGCTAATAGGCC 49286180 >seq3 Length=64463019 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 15403125 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 15403066 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 15403065 ACTGAGCTAATAGGCC 15403050 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1177153 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1177094 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1177093 TGAGCTAATAGGCC 1177080 >seq1 Length=61571842 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 48139319 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 48139260 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 48139259 TGAGCTAATAGGCCG 48139245 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 48158896 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 48158837 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 48158836 TGAGCTAATAGGCCG 48158822 >seq9 Length=72259479 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 57565548 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 57565489 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 57565488 TGAGCTAATAGGCC 57565475 Lambda K H 0.637 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261465105466288