Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 136 6e-28 seq2 132 8e-27 seq7 127 3e-25 seq5 127 3e-25 seq3 125 1e-24 seq1 118 2e-22 >seq9 Length=72259479 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 71005744 CGCTAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 71005686 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | | ||||| || | || || || ||||| |||| || || |||| || |||| Sbjct 71005685 TCAGGAGGCTGGCGCGCAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGA 71005626 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| ||| || || ||| || | Sbjct 71005625 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACACGG 71005566 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 71005565 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 71005506 Query 16671 GCCG 16674 |||| Sbjct 71005505 GCCG 71005502 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 53452931 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 53452990 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 53452991 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 53453050 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 53453051 CTTGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 53453110 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || |||| || || ||||| Sbjct 53453111 ACCGCCATGGACGTCGTCTACGCGCTGAAGCGCCAGGGCCG 53453151 >seq2 Length=61504503 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | |||||||| | || Sbjct 47004484 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGAGGCTGGCTCGGAGGGGC 47004543 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 47004544 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 47004603 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| | || ||||| ||| Sbjct 47004604 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGCGCAAGACCGTC 47004663 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 47004664 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 47004704 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| || | || Sbjct 46995271 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGAGGCTGGCCCGGAGGGGC 46995330 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 46995331 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 46995390 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| | || ||||| ||| Sbjct 46995391 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCAGGCGCAAGACCGTC 46995450 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 46995451 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 46995491 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||| ||||| || ||| | | ||||| | | || Sbjct 52835988 CTCCGAGACAACATCCAGGGCATCACGAAGCCGGCGATCAGGAGGCTGGCGAGGAGGGGC 52835929 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 52835928 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 52835869 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 52835868 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 52835809 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 52835808 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 52835768 >seq7 Length=46770411 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 40064347 CGCCAAGCGCCATCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 40064288 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 40064287 CCGGAGGCTGGCCAGGAGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 40064228 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || ||||| Sbjct 40064227 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACGTACACCGA 40064168 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 40064167 GCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 40064108 Query 16672 CCG 16674 ||| Sbjct 40064107 CCG 40064105 >seq5 Length=59822759 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||| |||||||| | Sbjct 6067897 CGCGAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACGAAGCCAGCGA 6067839 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 6067838 TCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGA 6067779 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| || | Sbjct 6067778 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGG 6067719 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 6067718 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 6067659 Query 16671 GCCG 16674 |||| Sbjct 6067658 GCCG 6067655 >seq3 Length=64463019 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 15894347 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGAGGAGGGGC 15894288 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 15894287 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 15894228 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 15894227 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 15894168 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || || || ||||| | |||| || || || Sbjct 15894167 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTTTACGGCTTCGG 15894109 >seq1 Length=61571842 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 52385954 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 52385895 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 52385894 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 52385835 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 52385834 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 52385775 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 52385774 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 52385715 Query 16672 CCG 16674 ||| Sbjct 52385714 CCG 52385712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067713654284