Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2 300 2e-76 seq4 221 2e-52 seq8 113 6e-20 seq6 82.4 1e-10 >seq2 Length=61504503 Score = 300 bits (332), Expect = 2e-76 Identities = 333/439 (76%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || |||||||| ||||| || || | || ||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| | |||||||||||||| | Sbjct 2078283 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 2078226 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || || |||||| |||||||| || | || ||||| | Sbjct 2078225 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 2078166 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCA 135611 | || ||||||||||| |||| ||| || || ||||| | ||||| || || | Sbjct 2078165 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 2078106 Query 135612 TCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGG 135671 | ||||||||||| ||| ||||||||||| |||| ||||| || |||||| | ||| | | Sbjct 2078105 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 2078046 Query 135672 TCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACC 135731 | | |||||| | | ||||| | ||| |||||||| ||||||||||| || || Sbjct 2078045 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 135732 GACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTG 135791 | ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||||| Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 135792 CTGTTTTCCTGGTCTACCC 135810 |||||||| || | |||| Sbjct 2077925 CTGTTTTCTTGATTGACCC 2077907 Score = 104 bits (114), Expect = 3e-17 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 135600 ACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTT 135659 |||| || | || | | ||||||| || || |||| ||| |||||||||| ||||||| Sbjct 9855160 ACTTTTACTCAATTTAGAAAGCTGCACCTGTTAATGAATGGTTATATAATGGCGGTCCTT 9855101 Query 135660 ATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGG 135719 || | ||| | || | || || | | ||||| | ||| |||| | | ||||||| Sbjct 9855100 ATGAGCTAATTGTTCTATACCTCTTGCTTGGTGTAGCTTGTTATATGGTTTGTGAGTGGG 9855041 Query 135720 AACTCTCTTACCGACTGGGTATGCGCCCTTGGAT--TTG-TGTCGCTTACTCAGCCCCTG 135776 |||| || || || |||||||| ||| ||| ||| || || || ||||| |||| Sbjct 9855040 AACTTAGTTTCCATCTAGGTATGCGTACTTAGATTGTTGCTGCTGCATATTCAGCTCCTG 9854981 Query 135777 TTGCCGCTGCTACTGCTGTTTTCCTG 135802 ||| |||||||||| ||||||| || Sbjct 9854980 ATGCAGCTGCTACTGTTGTTTTCTTG 9854955 >seq4 Length=49548238 Score = 221 bits (244), Expect = 2e-52 Identities = 239/315 (76%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 135528 CTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCT--AGCAA 135585 |||||||| || | || ||||| || || ||||||||||| |||| ||| || ||| Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA- 24272581 Query 135586 CGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATA 135645 || ||||| | ||||| || || || ||||||||||| ||| ||||||||||| |||| Sbjct 24272582 -GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATA 24272640 Query 135646 TAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACAT 135705 ||||| || |||||| | ||| | || | |||||| | | ||||| | ||| || Sbjct 24272641 CAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATAT 24272700 Query 135706 GGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTA 135765 ||||| ||||||||||| || ||| ||||||||||| ||||||||| ||| || || Sbjct 24272701 GGGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATA 24272760 Query 135766 CTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTC 135825 ||||| |||||||| |||||||||||||||||| || | |||| |||| ||||| Sbjct 24272761 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAG 24272820 Query 135826 TTTCAGTGATGGTAT 135840 ||| ||||| ||| Sbjct 24272821 TTTTTCTGATGCTAT 24272835 >seq8 Length=47074253 Score = 113 bits (124), Expect = 6e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | | |||||||| ||||| || || | || ||||| || || Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || ||||||||||| || Sbjct 5860655 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCC 5860597 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || || |||||| ||||||| || | || |||||||| Sbjct 5860596 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAA 5860537 Query 135553 CATCATCTCTGGTGCTGTTAT 135573 || ||||||||||| |||| Sbjct 5860536 TATTGTCTCTGGTGCTATTAT 5860516 >seq6 Length=48101398 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 136054 AGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGC 136113 || |||||| |||||||| |||||||| ||||| || ||||| | |||||||||||||| Sbjct 8140971 AGGGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGC 8141030 Query 136114 GTCGTTCAACAACTCTCG 136131 |||||||||||||| Sbjct 8141031 TAGTTTCAACAACTCTCG 8141048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627903727475200